View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8948_low_5 (Length: 554)
Name: NF8948_low_5
Description: NF8948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8948_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 18 - 537
Target Start/End: Original strand, 42931569 - 42932088
Alignment:
| Q |
18 |
caaccaatgactttgcaatagccaacaattcttaagttgagactgtgcggtttctccaaagctcttcactctcaccaaacaaaaatgggtcgagaaaaca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42931569 |
caaccaatgactttgcaatagccaacaattcttaagttgagactgtgcggtttctccaaagctcttcactctcaccaaacaaaaatgggtcgagaaaaca |
42931668 |
T |
|
| Q |
118 |
cccattcctgaacccggtccagacccaacccggctcgttttcaacaaataacaaaccgggtcacacccaacaccttttccttgaaccacaaccccccaca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42931669 |
cccattcctgaacccggtccagacccaacccggctcgttttcaacaaataacaaaccgggtcacacccaacaccttttccttgaaccacaaccccccaca |
42931768 |
T |
|
| Q |
218 |
tcttcgtcgttctttctttcaaccctctttcaccaccgtcctccgcctcatcttcccccaactcctccacaaatataaccccctccggcatcggagtttc |
317 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42931769 |
tcttcgtcgttctttctttcagccctctttcaccaccgtcctccgcctcatcttcccccaactcctccacaaatataaccccctccggcatcggagtttc |
42931868 |
T |
|
| Q |
318 |
accggtctcccatctttccttcacggcctcccaatcctccaccttctccgtcgctaacttcgtagtttcgtctttcttctttgaataaatttgcaccaac |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42931869 |
accggtctcccatctttccttcacggcctcccaatcctccaccttctccgtcgctaacttcgtagtttcgtctttcttctttgaataaatttgcaccaac |
42931968 |
T |
|
| Q |
418 |
aacggtgcttccttcaaattcttcacaatctccaccaccgattccctcatccacctatcaagcctctcttgagcctgaatagcttcattggttgttcctc |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42931969 |
aacggtgcttccttcaaattcttcacaatctccaccaccgattccctcatccacctatcaagcctctcttgagcctgaatagcttcattggttgttcctc |
42932068 |
T |
|
| Q |
518 |
ccctgttcttcccattacgt |
537 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
42932069 |
ccctgttcttcccattacgt |
42932088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University