View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8948_low_6 (Length: 438)
Name: NF8948_low_6
Description: NF8948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8948_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 147 - 425
Target Start/End: Complemental strand, 47810913 - 47810635
Alignment:
| Q |
147 |
acgactacatctttgttgaaacgaatcaacgctgaaattgcaaaaccggcatgttcgcgaattcggtgagaacatttcggatcaaagagaagcgactcta |
246 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
47810913 |
acgaatacatctttgttgaaacgaatcaacgctgaaattgcaaaaccggcatgttcgcgaattcggtgagaacatttaggatcaaagagaagcgactcta |
47810814 |
T |
|
| Q |
247 |
gcgatcaaaatagtttgagatttagaacgagttgttgtaactcgcggttgaagccttgtgagactctgtcagagaaccgagttaaaagttgaagcaactc |
346 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47810813 |
gcgaacaaaatagtttgagattgagaacgagttgttgtaactcgcggttgaagccttgtgagactctgtcagagaaccgagttaaaagttgaagcaactc |
47810714 |
T |
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| Q |
347 |
gtcttcgttttcattgttgttgccggaaacgaaacaggagagggtggtgacagtttcacggtcgatccatgattgaagt |
425 |
Q |
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||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47810713 |
gtcttcgttttcattgttgttgccggagacgagacaggagagggtggtgacagtttcacggtcgatccatgattgaagt |
47810635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 147 - 425
Target Start/End: Original strand, 3928236 - 3928495
Alignment:
| Q |
147 |
acgactacatctttgttgaaacgaatcaacgctgaaattgcaaaaccggcatgttcgcgaattcggtgagaacatttcggatcaaagagaagcgactcta |
246 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3928236 |
acgaatacatctttgttgaaacgaatcaacgctgaaattgcaaaaccggcatgttcgcgaattcggtgaga-------------------agcgactcta |
3928316 |
T |
|
| Q |
247 |
gcgatcaaaatagtttgagatttagaacgagttgttgtaactcgcggttgaagccttgtgagactctgtcagagaaccgagttaaaagttgaagcaactc |
346 |
Q |
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| T |
3928317 |
gcgaacaaaatagtttgagattgagaacgagttgttgtaactcgcggttgaagccttgtgagactctgtcagataaccgagttaaaagttgaagcaactc |
3928416 |
T |
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| Q |
347 |
gtcttcgttttcattgttgttgccggaaacgaaacaggagagggtggtgacagtttcacggtcgatccatgattgaagt |
425 |
Q |
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|||||||||||||||||| ||| |||| |||| |||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3928417 |
gtcttcgttttcattgttattgtcggagacgagacaggagagggtggtgacagtttcactgtcgatccatgattgaagt |
3928495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 12 - 150
Target Start/End: Complemental strand, 47811156 - 47811018
Alignment:
| Q |
12 |
ccttcaacagcttccttccttcaaaaatatccaatttcaagaacgcactccattgctagtaaactcaacttcatattatctgaattcaacaacgctatga |
111 |
Q |
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|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47811156 |
ccttcaaccgcttccttccttccaaaatatccaatttcaagaacgcactccattgctagtaaactcaacttcatattatctgaattcaacaacgctatga |
47811057 |
T |
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| Q |
112 |
ttttcgttatttcgccgtttgattcaatttcatcgacga |
150 |
Q |
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| T |
47811056 |
ttttcgttatttctccgtttgattcaatttcatctacga |
47811018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 12 - 148
Target Start/End: Original strand, 3927999 - 3928135
Alignment:
| Q |
12 |
ccttcaacagcttccttccttcaaaaatatccaatttcaagaacgcactccattgctagtaaactcaacttcatattatctgaattcaacaacgctatga |
111 |
Q |
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|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3927999 |
ccttcaaccgcttccttccttccaaaatatccaatttcaagaacgcactccattgctagtaaactcaacttcatattatatgaattcaacaacgctatga |
3928098 |
T |
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| Q |
112 |
ttttcgttatttcgccgtttgattcaatttcatcgac |
148 |
Q |
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||| |||||||| ||||||||||||||||||||||| |
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| T |
3928099 |
cttttgttatttctccgtttgattcaatttcatcgac |
3928135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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