View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8949_high_18 (Length: 276)
Name: NF8949_high_18
Description: NF8949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8949_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 22 - 266
Target Start/End: Original strand, 28130335 - 28130596
Alignment:
| Q |
22 |
gcctaaaatgtaacatatgctttcatacctttcactttctcattaataatgttatcacaaaacaaaactctgtatgattgtaggaatgcttggtctgctt |
121 |
Q |
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| T |
28130335 |
gcctaaaatgtaacatatgctttcatacctttcactttctcattaataatgttatcacaaaacaaaactctgtatgattgtaggaatgcttggtctgctt |
28130434 |
T |
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| Q |
122 |
ctacacggaattgaactcaacccaacgtgactatgctcagaccgctcaagcatgtgggaaag-----------------gtatggccgagcaaaaattga |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || ||||||||||||||| |
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| T |
28130435 |
ctacacggaattgaactcaacccaacgtgactatgctcagaccgctcaagcatgtgggaaggctctgattaaacgaagtgcttgaccgagcaaaaattga |
28130534 |
T |
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| Q |
205 |
agctggcaaattagagctggaagcggttccatttgaccttcgttccatactcgatgatgtcc |
266 |
Q |
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| T |
28130535 |
agctggcaaattagagctggaagcggttccatttgaccttcgttccatactcgatgatgtcc |
28130596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 22 - 181
Target Start/End: Complemental strand, 44821280 - 44821119
Alignment:
| Q |
22 |
gcctaaaatgtaacatatgctttcatacctttcactttctcattaataatgttatcacaaaacaaaactctgtatgattgtaggaatgcttggtctgctt |
121 |
Q |
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|||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44821280 |
gcctaacatgtaacatatgctttcatagctttcacttgctcattaataatgttatcacaaaacaaaactctgtatgattgtaggaatgcttggtctgctt |
44821181 |
T |
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| Q |
122 |
cta--cacggaattgaactcaacccaacgtgactatgctcagaccgctcaagcatgtgggaa |
181 |
Q |
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| T |
44821180 |
ctacgcacggaattgaactcaactcaacgggactatgctcagactgctcaagcatgtgggaa |
44821119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 190 - 266
Target Start/End: Complemental strand, 44821085 - 44821009
Alignment:
| Q |
190 |
ccgagcaaaaattgaagctggcaaattagagctggaagcggttccatttgaccttcgttccatactcgatgatgtcc |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44821085 |
ccgagcaaaaattgaagctggcaaattagagctggaagcggttccatttgaccttcgttccatactcgatgatgtcc |
44821009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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