View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8949_high_4 (Length: 508)
Name: NF8949_high_4
Description: NF8949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8949_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 18 - 492
Target Start/End: Original strand, 26147500 - 26147973
Alignment:
| Q |
18 |
agattatagtagcttgattttaaatattttccttttgtttttagcatagagtttgttacataaaatactgaaaagacatcaaaaagaaacttcgtttaga |
117 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
26147500 |
agattatagtagcttgattttaaatattttacttttgtttttagcatagagtttgttacataaaatactgaaaagacatcaaatagaaacttcgtttaga |
26147599 |
T |
|
| Q |
118 |
attttctaatatttaaaggaacataccacaattatcatgcttatcatacatttatggcatttatttattgtcacttttcttttccatttctctcccaaag |
217 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
26147600 |
attttctattatttaaaggaacataccacaattatcatgcttaacatacatttatggcatttatttattgtcacttttcctttccatttctctcccaaag |
26147699 |
T |
|
| Q |
218 |
ccgttcaaaacttttaccaagatttaaaaaattccaaattgtttcgaacctggatttgttttaaggtagctgaattcataattacaaaagtattattttt |
317 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26147700 |
ccgttctaaacttttaccaagatttaaaaaattccaaattgtttcgaacctggatttgttttaaggtagctgaattcataattacaaaagtattattttt |
26147799 |
T |
|
| Q |
318 |
ggtacgttttgaaaacataggtactaagaaacagaatcttaataaccacgagctatatacattgaccaattcatctctagccccttgtatattagattca |
417 |
Q |
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|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26147800 |
cgtacgttttg-aaatataggtactaagaaacagaatcttaataaccacgagctatatacattgaccaattcatctctagccccttgtatattagattca |
26147898 |
T |
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| Q |
418 |
ttgaaacaaaaacaagcagcataacttgtatatttaaagcttcaaaaccaggggcagaaattatcattacttttg |
492 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
26147899 |
ttgaaacaaaaacaagcagcataacttgtatatttaaagcttcaaaaccaggggcagaaattattattacttttg |
26147973 |
T |
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