View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8949_high_5 (Length: 495)
Name: NF8949_high_5
Description: NF8949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8949_high_5 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 452; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 1 - 495
Target Start/End: Complemental strand, 40124765 - 40124269
Alignment:
| Q |
1 |
aattaagaacaaagtaatgaacttgactattttattctcatcatctgtaagataaatgtatcgactgagattgcaaagatgaattccatgactgattaac |
100 |
Q |
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| T |
40124765 |
aattaagaacaaagtaatgaacttgactattttattctcatcatctgtaagataa-tgtatcgactgagattgcaaagatgaattccaagactgattaac |
40124667 |
T |
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| Q |
101 |
atcaatggttaatatggaaataccactgaactatcagtctaatagaactccaatctttttatttacttgacaccagatacaacat---aatttgagtaaa |
197 |
Q |
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| T |
40124666 |
atcaatggttaatatggaaataccacagaactatcagtctaatagaactccaatctttttatttacttgacaccagatacaacatcataatttgagtaaa |
40124567 |
T |
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| Q |
198 |
agaacatagtcgaagaaatgtaaacagataaaatttcgaattattgttttagtccccataatttgccagtgctgattagtttaatagctatcctggatgg |
297 |
Q |
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| T |
40124566 |
agaaaatagtcgaagaaatgtaaacagataaaatttcgaattatttttttagttcccataatttgccagtgctgattagtttaatagctatcctggatgg |
40124467 |
T |
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| Q |
298 |
ggactaattgcagtttgccaccgtatatctccgggagttgactttcgtctatatcttctaaaagtgttgatttcagcttgttgttttccacaaatactat |
397 |
Q |
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| T |
40124466 |
ggactaattgcagtttgccaccgtatatctccgggagttgactttcgtctatatcttctaaaagtgttgatttcagcttgttgttttccacaaatactat |
40124367 |
T |
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| Q |
398 |
ctgcaaggagatcgaactcaactttataagtattttccctcaacatctcaaacataaactgatatatagcaatacaatgcactgagatgtatatcatt |
495 |
Q |
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| T |
40124366 |
ctgcaaggagatcgaactcaactttataagtattttccctcaacatctcaaacataaactgatatatagcaataccatgcactgagatgtatatcatt |
40124269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 256 - 403
Target Start/End: Complemental strand, 40119841 - 40119693
Alignment:
| Q |
256 |
taatttgccagtgctgattagtttaat-agctatcctggatggggactaattgcagtttgccaccgtatatctccgggagttgactttcgtctatatctt |
354 |
Q |
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|||||| || ||| |||| |||||||| || ||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| |||| |
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| T |
40119841 |
taatttcccggtgttgataagtttaattagatattctggatggggactaattgcagtttgccaccatatatctcagggagttgactttcatctatgtctt |
40119742 |
T |
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| Q |
355 |
ctaaaagtgttgatttcagcttgttgttttccacaaatactatctgcaa |
403 |
Q |
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| T |
40119741 |
ctagaagtgttgattttagcttattgttctccacaaatactatctgcaa |
40119693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 429 - 465
Target Start/End: Complemental strand, 40119655 - 40119619
Alignment:
| Q |
429 |
attttccctcaacatctcaaacataaactgatatata |
465 |
Q |
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| T |
40119655 |
attttccctcaacaactcaaacataaactgatatata |
40119619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 40120071 - 40120043
Alignment:
| Q |
13 |
agtaatgaacttgactattttattctcat |
41 |
Q |
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| T |
40120071 |
agtaatgaacttgactattttattctcat |
40120043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 403
Target Start/End: Complemental strand, 44989364 - 44989261
Alignment:
| Q |
300 |
actaattgcagtttgccaccgtatatctccgggagttgactttcgtctatatcttctaaaagtgttgatttcagcttgttgttttccacaaatactatct |
399 |
Q |
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|||||| | |||||||| || |||||||| ||||| ||||| || || || ||||| | | ||||| ||||||||| ||||| || ||||||||||||| |
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| T |
44989364 |
actaatggaagtttgcctccatatatctctgggagctgactctcatcaatctcttcaagcaatgttgctttcagcttcttgttctcaacaaatactatct |
44989265 |
T |
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| Q |
400 |
gcaa |
403 |
Q |
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|||| |
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| T |
44989264 |
gcaa |
44989261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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