View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8949_low_1 (Length: 910)

Name: NF8949_low_1
Description: NF8949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8949_low_1
NF8949_low_1
[»] chr3 (2 HSPs)
chr3 (244-894)||(32176767-32177416)
chr3 (45-164)||(32177412-32177531)


Alignment Details
Target: chr3 (Bit Score: 619; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 619; E-Value: 0
Query Start/End: Original strand, 244 - 894
Target Start/End: Complemental strand, 32177416 - 32176767
Alignment:
Q  244 ttgatgaaacgacctttttaaaagtggaacttcgtgttagtatatacttcttgatcaaagaagagtgaattggaaatcaaaattaaatatggttactaat 343  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32177416 ttgatgaaacgacctttttaaaagtg-aacttcgtgttagtatatacttcttgatcaaagaagcgtgaattggaaatcaaaattaaatatggttactaat 32177318  T
Q  344 agttacatataaatgtattttctctttaagtatgcctataaacttttttgttcaactttaggacaaactcattttatattaaccttttcttattcttgct 443  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32177317 agttacatataaatgtattttctctttaagtatacctataaacatttttgttcaactttaggacaaactcattttatattaaccttttcttattcttgct 32177218  T
Q  444 cgtattcttttcccgttgcagctggatgagaatcaggcttacttctcataccaaaatcacagattttcatgacacaagatgtagagagaaacattatccg 543  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32177217 cgtattattttcccgttgcagctggatgagaatcaggcttacttctcataccaaaatcacagattttcatgacacaagatgtagagagaaacattatccg 32177118  T
Q  544 ccatctaacaagacttcagatttacatatgtataacctaatttgaaagaaaaatatcgtttgtaggatatgattcggcctatgtcttggtggagcggcca 643  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32177117 ccatctaacaagacttcagatttacatatgtataacctaatttgaaagaaaaatatcgtttgtaggatatgattcggcctatgtcttggtggagcggcca 32177018  T
Q  644 gacaaaaacgactagtaaatccatcaactcagatggtcatgttttcttaaaggcaaaggtgcatcccctcttcgccagaaatataccttttgctgccaca 743  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32177017 gacaaaaacgactagtaaatccatcaactcagatggtcatgttttcttaaaggcaaaggtgcatcccctcttcgccagaaatataccttttgctgccaca 32176918  T
Q  744 atatagtgtcatgaattatacatgcttgtttctgtttactgtaaaatatcaaccccagctcatagacaagaattcagccggtaaaccggcaaatttgctt 843  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32176917 atatagtgtcatgaattatacatgcttgtttctgtttactgtaaaatatcaaccccagctcatagacaagaattcagccggtaaaccggcaaatttgctt 32176818  T
Q  844 tcaaagtgggttatgtatagcatagcctaaataatttctagttcatgatgt 894  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  32176817 tcaaagtgggttatgtatcgcatagcctaaataacttctagttcatgatgt 32176767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 32177531 - 32177412
Alignment:
Q  45 actatctaggtatctccaacgaacgaataatccattattatgttccaaactatatcagcattggatgagtgactccatgtgccatacattagtttattac 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32177531 actatctaggtatctccaacgaacgaataatccattattatgttccaaactatatcaacattggatgagtgactccatgtgccatacattagtttattac 32177432  T
Q  145 tataccacgctagagttgat 164  Q
    ||||||||||||||||||||    
T  32177431 tataccacgctagagttgat 32177412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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