View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8949_low_17 (Length: 486)
Name: NF8949_low_17
Description: NF8949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8949_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 24 - 472
Target Start/End: Original strand, 39487842 - 39488290
Alignment:
| Q |
24 |
ggtgtggagcccagtcttcaatttaaatgaggatgctgttgtagcagatttaattgatgttgatttgaaacaatggaaaaaagaacttgtgctgcatagt |
123 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39487842 |
ggtgtggagcccagtctgcaatttaaatgaggatgctgttgtagcagatttaattgatgttgatttgaaacaatggaaaaaagaacttgtgctgcatagt |
39487941 |
T |
|
| Q |
124 |
ttcaatgctttcgaagccaatcaaattctcaacattcctatttcatggagactgcccgaggataagaaggtttggaattgggaaaggaatggtcaatact |
223 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39487942 |
ttcaatgctttcgaagccaaccaaattctcaacattcctatttcatggagactgcccgaggataagaaggtttggaattgggaaaggaatggtcaatact |
39488041 |
T |
|
| Q |
224 |
ccgttcgatcagcataccatctgctcaaggaagagacattacgaggcacccctgaagcatcagtaatgtgtaacaccggtatgtggaaggccatttggaa |
323 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39488042 |
ccgttcgatcagcataccatctactcaaggaagagacattacgaggcacccctgaagtatcagtaacgtgtaacaccggtatgtggaaggccatttggaa |
39488141 |
T |
|
| Q |
324 |
agttagaactcctcaaagggtcaggaatttcttatggagagctgctaaatgtatcttaccaactagatgtaagctggagacaaaaggaattactctagac |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39488142 |
agttagaactcctcaaagggtcaggaatttcttatggagagctgctaaatgtatcttaccaactagatgtaagctggagacaaaaggaattactctagac |
39488241 |
T |
|
| Q |
424 |
actagctgcccgttctgccatatcgacgaggaatcccaagaccacctct |
472 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39488242 |
actagctgcccgttctgccatatcgacgaggaatcccaagaccacctct |
39488290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 251
Target Start/End: Complemental strand, 5806762 - 5806689
Alignment:
| Q |
178 |
cccgaggataagaaggtttggaattgggaaaggaatggtcaatactccgttcgatcagcataccatctgctcaa |
251 |
Q |
| |
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||||||||||||||||| |||||||| ||||| || || | ||||| || |||| ||||||||||||||||| |
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| T |
5806762 |
cccgaggataagaaggtgtggaattgagaaagaaacagttactactcagtcagatcggcataccatctgctcaa |
5806689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 24 - 472
Target Start/End: Original strand, 46033964 - 46034412
Alignment:
| Q |
24 |
ggtgtggagcccagtcttcaatttaaatgaggatgctgttgtagcagatttaattgatgttgatttgaaacaatggaaaaaagaacttgtgctgcatagt |
123 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46033964 |
ggtgtagagcccagtctacaatttaaatgaggatgttgttgtagcagatttaattgatgttgatttgaaacaatggaaaaaagaacttgtgctgcatagt |
46034063 |
T |
|
| Q |
124 |
ttcaatgctttcgaagccaatcaaattctcaacattcctatttcatggagactgcccgaggataagaaggtttggaattgggaaaggaatggtcaatact |
223 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46034064 |
ttcaatgctttcgaagccaaccaaattctcaacattcctatttcatggagactgcccgaggataagaaggtttggaattgggaaaggaatggtcaatact |
46034163 |
T |
|
| Q |
224 |
ccgttcgatcagcataccatctgctcaaggaagagacattacgaggcacccctgaagcatcagtaatgtgtaacaccggtatgtggaaggccatttggaa |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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|
| T |
46034164 |
ccgttcgatcagcataccatctgctcaaggaagagacattacgaggcacccctgaagcatcagtaacgtgtaacaccggtatgtagaaggccatttggaa |
46034263 |
T |
|
| Q |
324 |
agttagaactcctcaaagggtcaggaatttcttatggagagctgctaaatgtatcttaccaactagatgtaagctggagacaaaaggaattactctagac |
423 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46034264 |
agttagaactcctcaaagggtcaggaatttcttatggagagctgctaaatgtatcttaccaactagatgtaagctggagacaaaaggaattactctagac |
46034363 |
T |
|
| Q |
424 |
actagctgcccgttctgccatatcgacgaggaatcccaagaccacctct |
472 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46034364 |
actagctgcccgttctgccatatcgacgaggaatcccaagaccacctct |
46034412 |
T |
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