View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8949_low_20 (Length: 468)
Name: NF8949_low_20
Description: NF8949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8949_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 452; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 8 - 467
Target Start/End: Complemental strand, 3209714 - 3209255
Alignment:
| Q |
8 |
ggacatcaccatgcaagtaccttaatttatatatcttgaaatttctaacaagtaagatgctatgctaactgtgttatcgttaacacccatgtcaatcatt |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3209714 |
ggacatcaccatgcaagtaccttaatttatatatcttgaaatttctaacaagtaagatgctatgctagctgtgttatcgttaacacccatgtcaatcatt |
3209615 |
T |
|
| Q |
108 |
ttccctccacactatataacttaactgcaagagattttcatgtatctttcccaaacatgaccttaaccaagatggaactaactccaatattgcttattgg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3209614 |
ttccctccacactatataacttaactgcaagagattttcatgtatctttcccaaacatgaccttaaccaagatggaactaactccaatattgcttattgg |
3209515 |
T |
|
| Q |
208 |
tttcattcttgtgctaagtatctatacaacttcagcacataaataccaagaattcacaactacaaatgaaggactagaagatgaaagtagcttattgact |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3209514 |
tttcattcttgtgctaagtatctatacaacttcagcacataaataccaagaattcacaactacaaatgaaggactagaagatgaaagtagcttattgact |
3209415 |
T |
|
| Q |
308 |
tacattgttcacgtcaaaaagccttaacttcaatctaaggagagtttgcatggttggtaccattcactcttgccggaaaccgctacaaaaactcaaaacc |
407 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3209414 |
tacattgttcacgtcaaaaagccttcacttcaatctaaggagagtttgcatggttggtaccattcactcttgccggaaaccgctacaaaaactcaaaacc |
3209315 |
T |
|
| Q |
408 |
agcagcgtattattttctcataccgaaacattgtagatggattcgccgtgaaattgaccc |
467 |
Q |
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| T |
3209314 |
agcagcgtattattttctcataccgaaacattgtagatggattcgccgtgaaattgaccc |
3209255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 13 - 467
Target Start/End: Complemental strand, 3203736 - 3203281
Alignment:
| Q |
13 |
tcaccatgcaa-gtaccttaatttatatatcttgaaatttctaacaagtaagatgctatgctaactgtgttatcgttaacacccatgtcaatcattttcc |
111 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3203736 |
tcaccatgcaaagtaccttaatttatatatcttgaaatttttaacaagtaagatgctatgctagctgtgttatcgttaacacccatgtcaatcattttcc |
3203637 |
T |
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| Q |
112 |
ctccacactatataacttaactgcaagagattttcatgtatctttcccaaacatgaccttaaccaagatggaactaactccaatattgcttattggtttc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3203636 |
ctccacactatataacttaactgcaagagattttcatgtatctttcccaaacatgaccttaaccaagatggaactaactccaatattgcttattggtttc |
3203537 |
T |
|
| Q |
212 |
attcttgtgctaagtatctatacaacttcagcacataaataccaagaattcacaactacaaatgaaggactagaagatgaaagtagcttattgacttaca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3203536 |
attcttgtgctaagtatctatacaacttcagcacataaataccaagaattcacagctacaaatgaaggactagaagatgaaagtagcttattgacttaca |
3203437 |
T |
|
| Q |
312 |
ttgttcacgtcaaaaagccttaacttcaatctaaggagagtttgcatggttggtaccattcactcttgccggaaaccgctacaaaaactcaaaaccagca |
411 |
Q |
| |
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||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || || ||||| |||||||||||||||| |
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| T |
3203436 |
ttgttcatgtcaataagccttctcttcaatctaaggagagtttgcatggttggtaccattcactcttgccacaagccactacagaaactcaaaaccagca |
3203337 |
T |
|
| Q |
412 |
gcgtattattttctcataccgaaacattgtagatggattcgccgtgaaattgaccc |
467 |
Q |
| |
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||||||||||||||||||| |||||||||| | |||||| |||||||||||||||| |
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| T |
3203336 |
gcgtattattttctcatacagaaacattgtggctggatttgccgtgaaattgaccc |
3203281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 161 - 467
Target Start/End: Complemental strand, 3217509 - 3217203
Alignment:
| Q |
161 |
aacatgaccttaaccaagatggaactaactccaatattgcttattggtttcattcttgtgctaagtatctatacaacttcagcacataaataccaagaat |
260 |
Q |
| |
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||||||| | ||| |||||||||||| |||||||| |||||| ||||||||||||| ||||||| || | | |||||||||| ||||||||||| ||| |
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| T |
3217509 |
aacatgaacataaacaagatggaactcactccaatcttgcttcttggtttcattctcctgctaagcatatgtcaaacttcagcaaataaataccaaaaat |
3217410 |
T |
|
| Q |
261 |
tcacaactacaaatgaaggactagaagatgaaagtagcttattgacttacattgttcacgtcaaaaagccttaacttcaatctaaggagagtttgcatgg |
360 |
Q |
| |
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| || || |||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||| |
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| T |
3217409 |
tagcagctgcaaatgaaggactagaagatcaaagtagcttgttgacttacattgttcacgttgaaaagccttctcttcaatctaaggagagtttggatgg |
3217310 |
T |
|
| Q |
361 |
ttggtaccattcactcttgccggaaaccgctacaaaaactcaaaaccagcagcgtattattttctcataccgaaacattgtagatggattcgccgtgaaa |
460 |
Q |
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|||||| ||||||||||||| | | || | | |||||||||||||||||| || | ||||||||||||| |||| | | ||||||||||||||||| |
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| T |
3217309 |
ctggtacaattcactcttgccagcagccaccataaaaactcaaaaccagcaacgcgtaattttctcataccaaaacgtcatgaatggattcgccgtgaaa |
3217210 |
T |
|
| Q |
461 |
ttgaccc |
467 |
Q |
| |
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||||||| |
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|
| T |
3217209 |
ttgaccc |
3217203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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