View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8949_low_23 (Length: 445)
Name: NF8949_low_23
Description: NF8949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8949_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Original strand, 7838972 - 7839395
Alignment:
| Q |
1 |
tgtttgaccttgtggtttaaggttctgagtgtgaggtatggtagttagatctcttcctctcgggggaagacgcacttgggttaatcaacattagctagtt |
100 |
Q |
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| T |
7838972 |
tgtttgaccttgtggtttaaggttctgagtgtgaggtatggtagttagatctcttcctctcgggggaagacgcacttggcttaatcaacattagctagtt |
7839071 |
T |
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| Q |
101 |
ggcgagagatgtctctctggtaggaaagcttgttgtttcgactttggggtgttctctcaaagtgtggttatggttgttgaaatgggttgacaacaacatt |
200 |
Q |
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| T |
7839072 |
ggcgagagatgtctctctggtaggaaagcttgttgtttcaactttggggtgttctctcaaagtgtggttatggttgttgaaatgggttgacaacaacatt |
7839171 |
T |
|
| Q |
201 |
ctagttgaatgtttgggttagggatcttgacatgagagatcactttcctagattgtttgttgtttcaaataaacaagagacggttgcgagaaattttgat |
300 |
Q |
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| T |
7839172 |
ctagttgaatgtttgggttagggatcttgccatgagagatcactttcctagattgtttgttgtttcaaataaacaagagacggttgcgagaaattt---t |
7839268 |
T |
|
| Q |
301 |
aagtgagttgatgacaaatcgattttcagagtttacgtggaggagagttctccttgctttggaacacgagttggtatttggttattattgttggtgtggt |
400 |
Q |
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| T |
7839269 |
aagtgagttgacgacaaatcgattttcagagtttacgtggaggagagttctccttgctttggaacacaagttggtatttggttattattgttggtgtggt |
7839368 |
T |
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| Q |
401 |
ttctatatccatagaggatgacaaatg |
427 |
Q |
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| T |
7839369 |
ttctatatccatagaggatgacaaatg |
7839395 |
T |
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