View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8949_low_28 (Length: 414)

Name: NF8949_low_28
Description: NF8949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8949_low_28
NF8949_low_28
[»] chr7 (7 HSPs)
chr7 (130-344)||(21906759-21906973)
chr7 (1-67)||(21906323-21906389)
chr7 (126-192)||(30017471-30017537)
chr7 (132-181)||(31772105-31772154)
chr7 (128-185)||(45429313-45429370)
chr7 (133-192)||(18358786-18358845)
chr7 (130-186)||(28243159-28243215)
[»] chr5 (3 HSPs)
chr5 (267-398)||(29784937-29785068)
chr5 (1-130)||(29784728-29784857)
chr5 (130-186)||(14717337-14717393)
[»] chr6 (3 HSPs)
chr6 (134-204)||(24341474-24341543)
chr6 (133-214)||(33508658-33508739)
chr6 (128-185)||(26180604-26180661)
[»] chr3 (2 HSPs)
chr3 (133-214)||(35970409-35970490)
chr3 (130-192)||(8173125-8173187)
[»] chr4 (2 HSPs)
chr4 (130-186)||(31053041-31053097)
chr4 (130-196)||(10355230-10355296)
[»] chr8 (1 HSPs)
chr8 (133-192)||(10172473-10172532)
[»] chr1 (3 HSPs)
chr1 (125-156)||(52066867-52066898)
chr1 (126-156)||(16306515-16306545)
chr1 (135-192)||(16234083-16234140)
[»] chr2 (1 HSPs)
chr2 (135-185)||(24080357-24080407)


Alignment Details
Target: chr7 (Bit Score: 143; Significance: 5e-75; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 130 - 344
Target Start/End: Original strand, 21906759 - 21906973
Alignment:
Q  130 ttttcatattcattaattgacatgacaacgtatcagtggatgcatatgtaaaataatcgtacaatgagagagtatcctaattaaatcctttggtatacat 229  Q
    |||||||||||||||||||||||   || |||||| | ||||||| ||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  21906759 ttttcatattcattaattgacatagtaaagtatcattagatgcatgtgtaagataatcgtacaatgatagagtatactaattaaatcctttggtatacat 21906858  T
Q  230 aaatatacaattgtgctaaaatgtgaaatcacataattattactaacctcttgtgcatcaaatatttttcgatgagttttcaattggaagaagatatatg 329  Q
     |||||||||||||||| ||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21906859 caatatacaattgtgctcaaatgtgaaattacataattagtaataacctcttgtgcatcaaatatttttcgatgagttttcaaatggaagaagatatatg 21906958  T
Q  330 aaacatatgctagaa 344  Q
     ||| ||||||||||    
T  21906959 caacgtatgctagaa 21906973  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 21906323 - 21906389
Alignment:
Q  1 atgtcatacccaccaaccaactaaatgcactccaaaatcctatcactgctttttcatcatcttcatc 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  21906323 atgtcatacccaccaaccaactaaatgcactccaaaatcctatcacttctttttcatcatcttcatc 21906389  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 126 - 192
Target Start/End: Original strand, 30017471 - 30017537
Alignment:
Q  126 tgtattttcatattcattaattgacatgacaacgtatcagtggatgcatatgtaaaataatcgtaca 192  Q
    |||||||| |||||||||||||||| |||||||| |||  ||||||||| ||||||||||| |||||    
T  30017471 tgtattttgatattcattaattgacgtgacaacgcatcgttggatgcatgtgtaaaataattgtaca 30017537  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 31772154 - 31772105
Alignment:
Q  132 ttcatattcattaattgacatgacaacgtatcagtggatgcatatgtaaa 181  Q
    ||||||||||||||||||||||||||| |||||  |||||||| ||||||    
T  31772154 ttcatattcattaattgacatgacaacatatcacgggatgcatgtgtaaa 31772105  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 128 - 185
Target Start/End: Original strand, 45429313 - 45429370
Alignment:
Q  128 tattttcatattcattaattgacatgacaacgtatcagtggatgcatatgtaaaataa 185  Q
    |||||||||||||||||||||||||| ||||  |||| | ||||||| ||||||||||    
T  45429313 tattttcatattcattaattgacatggcaacaaatcatttgatgcatgtgtaaaataa 45429370  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 18358845 - 18358786
Alignment:
Q  133 tcatattcattaattgacatgacaacgtatcagtggatgcatatgtaaaataatcgtaca 192  Q
    ||||||||||||||||||||||||||  |||| | ||||||| || |||||||| |||||    
T  18358845 tcatattcattaattgacatgacaacacatcatttgatgcatgtgcaaaataatggtaca 18358786  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 28243215 - 28243159
Alignment:
Q  130 ttttcatattcattaattgacatgacaacgtatcagtggatgcatatgtaaaataat 186  Q
    |||||||||||||||||||| ||||||||  |||| ||||||| | | |||||||||    
T  28243215 ttttcatattcattaattgatatgacaacacatcattggatgcgtgtttaaaataat 28243159  T

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Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 267 - 398
Target Start/End: Original strand, 29784937 - 29785068
Alignment:
Q  267 tattactaacctcttgtgcatcaaatatttttcgatgagttttcaattggaagaagatatatgaaacatatgctagaagcataacaacactgctagctct 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29784937 tattactaacctcttgtgcatcaaatatttttcgatgagttttcaattggaagaagatatatgaaacatatgctagaagcataacaacactgctagctct 29785036  T
Q  367 tgacaattgaagagtagaattggcaatagaat 398  Q
    ||||||||||||||||||||||||||||||||    
T  29785037 tgacaattgaagagtagaattggcaatagaat 29785068  T

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Target: chr5; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 29784728 - 29784857
Alignment:
Q  1 atgtcatacccaccaaccaactaaatgcactccaaaatcctatcactgctttttcatcatcttcatcatctacctgaaaatcaaaccccatacataattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29784728 atgtcatacccaccaaccaactaaatgcactccaaaatcctatcactgctttttcatcatcttcatcatctacctgaaaatcaaaccccatacataattt 29784827  T
Q  101 aagtggatttaattcatatacactttgtat 130  Q
    ||||||||||||||||||||||||||||||    
T  29784828 aagtggatttaattcatatacactttgtat 29784857  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 14717337 - 14717393
Alignment:
Q  130 ttttcatattcattaattgacatgacaacgtatcagtggatgcatatgtaaaataat 186  Q
    ||||||||||||||||||||  |||||||  |||| | ||||||| |||||||||||    
T  14717337 ttttcatattcattaattgatgtgacaacacatcattagatgcatgtgtaaaataat 14717393  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 134 - 204
Target Start/End: Original strand, 24341474 - 24341543
Alignment:
Q  134 catattcattaattgacatgacaacgtatcagtggatgcatatgtaaaataatcgtacaatgagagagtat 204  Q
    ||||||||| |||||||||| |||| ||||| | ||||||||||||||||||| ||||||||||| |||||    
T  24341474 catattcat-aattgacatgtcaacatatcattagatgcatatgtaaaataattgtacaatgagaaagtat 24341543  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 214
Target Start/End: Original strand, 33508658 - 33508739
Alignment:
Q  133 tcatattcattaattgacatgacaacgtatcagtggatgcatatgtaaaataatcgtacaatgagagagtatcctaattaaa 214  Q
    ||||||||||| ||||||| |||||   || | |||||| || ||||||||||| ||||||||||||||||| |||||||||    
T  33508658 tcatattcattcattgacacgacaaaacataattggatgtatgtgtaaaataattgtacaatgagagagtatactaattaaa 33508739  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 26180661 - 26180604
Alignment:
Q  128 tattttcatattcattaattgacatgacaacgtatcagtggatgcatatgtaaaataa 185  Q
    ||||||||||||||||||| || ||||||||  || | | ||||||||||||||||||    
T  26180661 tattttcatattcattaatggatatgacaacacatgattagatgcatatgtaaaataa 26180604  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 133 - 214
Target Start/End: Complemental strand, 35970490 - 35970409
Alignment:
Q  133 tcatattcattaattgacatgacaacgtatcagtggatgcatatgtaaaataatcgtacaatgagagagtatcctaattaaa 214  Q
    |||||||||||||||||| |||||||  || | || |||||| |||||||||||| |||| | | ||||||| |||||||||    
T  35970490 tcatattcattaattgacgtgacaacacatgattgaatgcatgtgtaaaataatcatacactcacagagtatactaattaaa 35970409  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 192
Target Start/End: Complemental strand, 8173187 - 8173125
Alignment:
Q  130 ttttcatattcattaattgacatgacaacgtatcagtggatgcatatgtaaaataatcgtaca 192  Q
    |||| ||||||||||||| || ||||||| ||||| | ||| ||||||||||||||| |||||    
T  8173187 tttttatattcattaattaacgtgacaacatatcattagatacatatgtaaaataattgtaca 8173125  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 31053041 - 31053097
Alignment:
Q  130 ttttcatattcattaattgacatgacaacgtatcagtggatgcatatgtaaaataat 186  Q
    |||||||||||||||||||||  ||||||  |||| ||||||||| |||||||||||    
T  31053041 ttttcatattcattaattgacgcgacaacacatcattggatgcatgtgtaaaataat 31053097  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 196
Target Start/End: Complemental strand, 10355296 - 10355230
Alignment:
Q  130 ttttcatattcattaattgacatgacaacgtatcagtggatgcatatgtaaaataatcgtacaatga 196  Q
    |||| |||||||||||||||||||||||   || | || |||||||||||||||||| | |||||||    
T  10355296 tttttatattcattaattgacatgacaaaacatgattgaatgcatatgtaaaataattggacaatga 10355230  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 10172473 - 10172532
Alignment:
Q  133 tcatattcattaattgacatgacaacgtatcagtggatgcatatgtaaaataatcgtaca 192  Q
    ||||||||| |||||||| |||||||| |||| | ||||||| ||||||||||| |||||    
T  10172473 tcatattcactaattgacgtgacaacgcatcatttgatgcatgtgtaaaataattgtaca 10172532  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 125 - 156
Target Start/End: Original strand, 52066867 - 52066898
Alignment:
Q  125 ttgtattttcatattcattaattgacatgaca 156  Q
    ||||||||||||||||||||||||||||||||    
T  52066867 ttgtattttcatattcattaattgacatgaca 52066898  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 156
Target Start/End: Complemental strand, 16306545 - 16306515
Alignment:
Q  126 tgtattttcatattcattaattgacatgaca 156  Q
    |||||||||||||||||||||||||||||||    
T  16306545 tgtattttcatattcattaattgacatgaca 16306515  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 192
Target Start/End: Original strand, 16234083 - 16234140
Alignment:
Q  135 atattcattaattgacatgacaacgtatcagtggatgcatatgtaaaataatcgtaca 192  Q
    ||||| |||||||||| ||||||||||  | |||||| |||||||||||||| |||||    
T  16234083 atatttattaattgacctgacaacgtaatattggatgtatatgtaaaataattgtaca 16234140  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 185
Target Start/End: Complemental strand, 24080407 - 24080357
Alignment:
Q  135 atattcattaattgacatgacaacgtatcagtggatgcatatgtaaaataa 185  Q
    |||| |||||||||| ||||||||  |||| ||||||||||||||||||||    
T  24080407 atatccattaattgagatgacaacacatcattggatgcatatgtaaaataa 24080357  T

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