View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8949_low_3 (Length: 755)

Name: NF8949_low_3
Description: NF8949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8949_low_3
NF8949_low_3
[»] chr1 (6 HSPs)
chr1 (19-739)||(33301714-33302432)
chr1 (452-630)||(33250219-33250397)
chr1 (452-630)||(33270391-33270569)
chr1 (479-630)||(33310126-33310277)
chr1 (680-739)||(33250097-33250155)
chr1 (680-739)||(33270269-33270327)
[»] chr7 (2 HSPs)
chr7 (250-345)||(21148660-21148755)
chr7 (244-327)||(34726588-34726671)
[»] chr2 (3 HSPs)
chr2 (238-432)||(2419882-2420076)
chr2 (309-432)||(42510694-42510818)
chr2 (134-218)||(41513823-41513910)
[»] chr8 (2 HSPs)
chr8 (271-432)||(13054306-13054464)
chr8 (375-424)||(11567574-11567623)
[»] chr6 (1 HSPs)
chr6 (369-424)||(5550798-5550853)
[»] chr4 (1 HSPs)
chr4 (237-323)||(34069128-34069214)
[»] chr3 (2 HSPs)
chr3 (374-432)||(15801460-15801518)
chr3 (271-359)||(40192019-40192108)


Alignment Details
Target: chr1 (Bit Score: 656; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 656; E-Value: 0
Query Start/End: Original strand, 19 - 739
Target Start/End: Complemental strand, 33302432 - 33301714
Alignment:
Q  19 atcatgcagttattagaggcattaggtatgattcaactataataatatactttggtagtgtgttttttggtttgattaaatatgcattttactatttgga 118  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33302432 atcatgcagttattagaggcattaggtatgattcaactataatagtatactttggtagtgtgttttttggtttgattaaatatgcattttactatttgga 33302333  T
Q  119 attataaggcttgatcaatttaatccctcatatttgcaaattaacattttagtcccttaaattgaaaaacaatcaatctactccctccatcaaaatattt 218  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33302332 attataaggcttgatca-tttaatccctcatatttgcaaaataacattttagtcccttaaattgaaaaacaatcaatctactccctccatcaaaatattt 33302234  T
Q  219 atatagtaaagaacaatagaagacgtacatattgacttaagtagtattttcttgcatcaaaacaagcatagaatctttaaaattctgatacaaaatttga 318  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |    
T  33302233 atatagtaaagaacaatagaagacgtaagtattgacttaagtagtattttcctgcatcaaaacaagcatagaatctttaaaattctgatacaaaattata 33302134  T
Q  319 gaaaatgactaaatcggttgatatttttaaattcaaggactaaaatgttattttaaaaatttgagcgactaaattgaccgacctttacattttcaaagac 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33302133 gaaaatgactaaatcggttgatatttttaaattcaaggactaaaatgttattttaaaaatttgagcgactaaattgaccgacctttacattttcaaagac 33302034  T
Q  419 taaaatacctatttcctctcttgtgtatgatatagttaacattttcctattggaattttaacaggagagctattatgacaaggagggcagtgagggtgaa 518  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33302033 taaaatacctatttcctctcttgtgtatgatatagttaaca-tttcctattggaattttaacaggagagctattatgacaaggagggcagtgagggtgaa 33301935  T
Q  519 ttcacaattgaaatcacacaaaagatttgctaatgcatttccaagatattgcaaacttgttgataatgccagactctattgcacaaatgatgttggggtc 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33301934 ttcacaattgaaatcacacaaaagatttgctaatgcatttccaagatattgcaaacttgttgataatgccagactctattgcacaaatgatgttggggtc 33301835  T
Q  619 ccaccaaaggtacatgaacannnnnnnctatcttgtgattgattttacactttactagtagtaaaatgtgaagagggtaattttctttttcatacaaaac 718  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33301834 ccaccaaaggtacatgaacatttttttctatcttgtgattgattttacactttactagtagtaaaatgtgaagagggtaattttctttttcatacaaaac 33301735  T
Q  719 agcttattgggtggaaggatg 739  Q
    |||||||||||||||||||||    
T  33301734 agcttattgggtggaaggatg 33301714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 452 - 630
Target Start/End: Complemental strand, 33250397 - 33250219
Alignment:
Q  452 agttaacattttcctattggaattttaacaggagagctattatgacaaggagggcagtgagggtgaattcacaattgaaatcacacaaaagatttgctaa 551  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||| |||||||||||||||||    
T  33250397 agttaacattttccttttggaattttaacaggagagctattatgacagggagggcagtgagggtgaattcacagttgcaatctcacaaaagatttgctaa 33250298  T
Q  552 tgcatttccaagatattgcaaacttgttgataatgccagactctattgcacaaatgatgttggggtcccaccaaaggta 630  Q
    ||||||||||| ||| |||||||||||||| | ||| || |||||||||||| ||| |||||| |  ||||||||||||    
T  33250297 tgcatttccaaaatactgcaaacttgttgacagtgctaggctctattgcacagatgctgttggtggtccaccaaaggta 33250219  T

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Target: chr1; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 452 - 630
Target Start/End: Complemental strand, 33270569 - 33270391
Alignment:
Q  452 agttaacattttcctattggaattttaacaggagagctattatgacaaggagggcagtgagggtgaattcacaattgaaatcacacaaaagatttgctaa 551  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||| |||||||||||||||||    
T  33270569 agttaacattttccttttggaattttaacaggagagctattatgacagggagggcagtgagggtgaattcacagttgcaatctcacaaaagatttgctaa 33270470  T
Q  552 tgcatttccaagatattgcaaacttgttgataatgccagactctattgcacaaatgatgttggggtcccaccaaaggta 630  Q
    ||||||||||| ||| |||||||||||||| | ||| || |||||||||||| ||| |||||| |  ||||||||||||    
T  33270469 tgcatttccaaaatactgcaaacttgttgacagtgctaggctctattgcacagatgctgttggtggtccaccaaaggta 33270391  T

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Target: chr1; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 479 - 630
Target Start/End: Complemental strand, 33310277 - 33310126
Alignment:
Q  479 acaggagagctattatgacaaggagggcagtgagggtgaattcacaattgaaatcacacaaaagatttgctaatgcatttccaagatattgcaaacttgt 578  Q
    ||||||||||||| |||||||  |||||||| |||||||| |||||| || |||| |||||||||||||||||||||||||||| ||||||| |||||||    
T  33310277 acaggagagctatcatgacaaaaagggcagtaagggtgaaatcacaactggaatctcacaaaagatttgctaatgcatttccaaaatattgcgaacttgt 33310178  T
Q  579 tgataatgccagactctattgcacaaatgatgttggggtcccaccaaaggta 630  Q
    ||| | ||| || || |||| ||||| ||||||| | |  ||||||||||||    
T  33310177 tgacagtgctaggctatattacacaagtgatgttcgtggtccaccaaaggta 33310126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 680 - 739
Target Start/End: Complemental strand, 33250155 - 33250097
Alignment:
Q  680 taaaatgtgaagagggtaattttctttttcatacaaaacagcttattgggtggaaggatg 739  Q
    |||||||| |||| | |||||||||||| || ||||||||||||||||| ||||||||||    
T  33250155 taaaatgtcaagaagataattttctttt-cacacaaaacagcttattggatggaaggatg 33250097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 680 - 739
Target Start/End: Complemental strand, 33270327 - 33270269
Alignment:
Q  680 taaaatgtgaagagggtaattttctttttcatacaaaacagcttattgggtggaaggatg 739  Q
    |||||||| |||| | |||||||||||| || ||||||||||||||||| ||||||||||    
T  33270327 taaaatgtcaagaagataattttctttt-cacacaaaacagcttattggatggaaggatg 33270269  T

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Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 250 - 345
Target Start/End: Original strand, 21148660 - 21148755
Alignment:
Q  250 ttgacttaagtagtattttcttgcatcaaaacaagcatagaatctttaaaattctgatacaaaatttgagaaaatgactaaatcggttgatatttt 345  Q
    ||||||||| |||| |||||||| |||||||||| |||| || |||||||||| ||||| | || |||| ||||||||||||| | ||||||||||    
T  21148660 ttgacttaaatagtgttttcttgaatcaaaacaaacataaaacctttaaaattgtgataaagaaattgataaaatgactaaattgattgatatttt 21148755  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 244 - 327
Target Start/End: Complemental strand, 34726671 - 34726588
Alignment:
Q  244 tacatattgacttaagtagtattttcttgcatcaaaacaagcatagaatctttaaaattctgatacaaaatttgagaaaatgac 327  Q
    ||||||||||||||| |||| ||||  ||||||||||||||||||||| |||| |||||  |||  ||||||||| ||||||||    
T  34726671 tacatattgacttaaatagtcttttgctgcatcaaaacaagcatagaaccttttaaattgagatggaaaatttgaaaaaatgac 34726588  T

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Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 238 - 432
Target Start/End: Original strand, 2419882 - 2420076
Alignment:
Q  238 aagacgtacatattgacttaagtagtattttcttgcatcaaaacaagcatagaatctttaaaattctgatacaaaatttgagaaaatgactaaatcggtt 337  Q
    ||||| ||||||| || |||| |||| |||| |||||||||||||||  || || ||||||| || || | |||||||||| |||| |||||||| | ||    
T  2419882 aagacatacatatagaattaaatagtcttttgttgcatcaaaacaagtgtaaaacctttaaa-ttgtggtgcaaaatttgaaaaaaagactaaattgatt 2419980  T
Q  338 gatatttttaaattcaag-gactaaaatgttattttaaaaatttgagcgactaaattgaccgacctttacattttcaaagactaaaatacctattt 432  Q
    |||||||||||||| ||| ||||||| || ||||| | |||||||||  ||| | || || ||   ||||| |||| | |||||||||||||||||    
T  2419981 gatatttttaaatttaagagactaaattgctatttcacaaatttgaggaactgagttaactgattgttacaatttctaggactaaaatacctattt 2420076  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 309 - 432
Target Start/End: Complemental strand, 42510818 - 42510694
Alignment:
Q  309 caaaatttgagaaaatgactaaatcggttgatatttttaaattcaagg-actaaaatgttattttaaaaatttgagcgactaaattgaccgacctttaca 407  Q
    |||||||||| ||| ||||||||| | |||| |||||| |||| |||| |||||| |  |||||   | |||| |  |||||||||||||||||||||||    
T  42510818 caaaatttgaaaaattgactaaattgtttgacatttttcaatttaagggactaaactcctatttcgcagatttcaaggactaaattgaccgacctttaca 42510719  T
Q  408 ttttcaaagactaaaatacctattt 432  Q
     |||||| ||||||||| |||||||    
T  42510718 atttcaaggactaaaatgcctattt 42510694  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 218
Target Start/End: Original strand, 41513823 - 41513910
Alignment:
Q  134 caatttaatccctcatatttgcaaattaacattttagtcccttaaattgaaaaa---caatcaatctactccctccatcaaaatattt 218  Q
    ||||||| ||| ||| ||||||||| || ||  |||||||||||||||||||||   |||||||| || || ||||||||||||||||    
T  41513823 caatttagtccttcaaatttgcaaaatagcaagttagtcccttaaattgaaaaatatcaatcaatttagtctctccatcaaaatattt 41513910  T

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Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 271 - 432
Target Start/End: Complemental strand, 13054464 - 13054306
Alignment:
Q  271 tgcatcaaaacaagcatagaatctttaaaattctgatacaaaatttgagaaaatgactaaatcggttgatatttttaaattcaaggactaaaatgttatt 370  Q
    |||||||||| |||||||||| |||||||||| ||  | ||||||| | ||||||||||||  | ||||||||||| |||| ||  |||||| || ||||    
T  13054464 tgcatcaaaataagcatagaacctttaaaattgtgggataaaatttaa-aaaatgactaaaatgtttgatatttttcaatttaa--actaaattgctatt 13054368  T
Q  371 ttaaaaatttgagcgactaaattgaccgacctttacattttcaaagactaaaatacctattt 432  Q
    | | | ||||||| |||||||||||||| || ||  | |||||| || |||||| |||||||    
T  13054367 tcacatatttgagggactaaattgaccggcccttgaaatttcaacgaataaaatgcctattt 13054306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 375 - 424
Target Start/End: Complemental strand, 11567623 - 11567574
Alignment:
Q  375 aaatttgagcgactaaattgaccgacctttacattttcaaagactaaaat 424  Q
    ||||||||| ||||||||||||||||| ||||| |||||| |||||||||    
T  11567623 aaatttgagggactaaattgaccgacccttacaatttcaaggactaaaat 11567574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 369 - 424
Target Start/End: Original strand, 5550798 - 5550853
Alignment:
Q  369 ttttaaaaatttgagcgactaaattgaccgacctttacattttcaaagactaaaat 424  Q
    |||| |||||||||| || ||||||||| |||| ||||| ||||||||||||||||    
T  5550798 ttttgaaaatttgagggattaaattgacagacccttacaatttcaaagactaaaat 5550853  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 237 - 323
Target Start/End: Original strand, 34069128 - 34069214
Alignment:
Q  237 gaagacgtacatattgacttaagtagtattttcttgcatcaaaacaagcatagaatctttaaaattctgatacaaaatttgagaaaa 323  Q
    |||||||||||||| ||||||| ||||  ||| |||||||||||||| | ||   | ||||||||| || |||||||||||| ||||    
T  34069128 gaagacgtacatatcgacttaaatagttctttgttgcatcaaaacaaacctaatctgtttaaaattgtggtacaaaatttgaaaaaa 34069214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 374 - 432
Target Start/End: Complemental strand, 15801518 - 15801460
Alignment:
Q  374 aaaatttgagcgactaaattgaccgacctttacattttcaaagactaaaatacctattt 432  Q
    |||||||||| || | |||||||||||| ||||| ||| ||||||||||||| ||||||    
T  15801518 aaaatttgagggattgaattgaccgaccgttacaatttgaaagactaaaatatctattt 15801460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 271 - 359
Target Start/End: Original strand, 40192019 - 40192108
Alignment:
Q  271 tgcatcaaaacaagcatagaatctttaaaattc-tgatacaaaatttgagaaaatgactaaatcggttgatatttttaaattcaaggact 359  Q
    ||||||||||| | ||||||| ||||||||||  || | | || ||||||||||||| ||||| | ||||||||||| |||| |||||||    
T  40192019 tgcatcaaaaccaacatagaacctttaaaatttatggtgcgaagtttgagaaaatgattaaattgattgatatttttcaatttaaggact 40192108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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