View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8949_low_31 (Length: 392)
Name: NF8949_low_31
Description: NF8949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8949_low_31 |
 | |
|
| [»] scaffold0096 (1 HSPs) |
| | |
|
| [»] scaffold0008 (1 HSPs) |
| | |
|
| [»] scaffold0034 (1 HSPs) |
| | |
|
| [»] scaffold0433 (1 HSPs) |
| | |
|
| [»] scaffold0192 (1 HSPs) |
| | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
| [»] scaffold0063 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 14 - 387
Target Start/End: Complemental strand, 24976063 - 24975691
Alignment:
| Q |
14 |
tgtgtcaattaggacttgtcggacatcaacatttgccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatca |
113 |
Q |
| |
|
|||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24976063 |
tgtgtcaattaggacttgtcggacgtctgaattggccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatca |
24975964 |
T |
|
| Q |
114 |
tagaatgccaaaggtggccttcctccaaggttggaggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagatgt |
213 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||| | | |||||| ||||||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
24975963 |
tagaacgccaaaggtggccttcctccgtggttggagggggctagcaagtttacactcatgagttcctcgaactttctcttcatgctctccatggagacgt |
24975864 |
T |
|
| Q |
214 |
tcaatattcctcccgggatgacgttggcataggggaactgctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaatcaccgagatgtt |
313 |
Q |
| |
|
||| | ||||||||| ||| |||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
24975863 |
tcagtgttcctcccgtgataacgttggcggaggggaactgctcccaggtgcatgaata-aggggtgatttccacgttgtcagggaagtcaccgagatgtt |
24975765 |
T |
|
| Q |
314 |
ccacggacatggcaactttcttaccaggctcggagccgtcaatgatgagttcgacggtctttctctctgcttct |
387 |
Q |
| |
|
| | ||||||||||||| ||||||||||||| ||||| |||| ||| || |||||||| ||||| ||||||||| |
|
|
| T |
24975764 |
ctatggacatggcaactgtcttaccaggctctgagccatcaacgataagctcgacggtttttctttctgcttct |
24975691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 12 - 387
Target Start/End: Original strand, 23490374 - 23490744
Alignment:
| Q |
12 |
cctgtgtcaattaggacttgtcggacatcaacatttgccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaat |
111 |
Q |
| |
|
|||||||||||||||||| ||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
23490374 |
cctgtgtcaattaggactcgtcggacgtctgtattggccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaagaagttctgaat |
23490473 |
T |
|
| Q |
112 |
catagaatgccaaaggtggccttcctccaaggttggaggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||| || | | ||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
23490474 |
catagaatgccaaaggtggccttcctccgtggttcgagagggctagcaa----acactcatgagttcctcgaactttctcttcatgctccccatggagac |
23490569 |
T |
|
| Q |
212 |
gttcaatattcctcccgggatgacgttggcataggggaactgctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaatcaccgagatg |
311 |
Q |
| |
|
||| | | ||||||| | ||| |||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
23490570 |
gtttagtgttcctcctgtgataacgttggcggaggggaactgctcccaggtgcatgagtaacggg-tgatttccacgttgtcagggaaatcaccgagatg |
23490668 |
T |
|
| Q |
312 |
ttccacggacatggcaactttcttaccaggctcggagccgtcaatgatgagttcgacggtctttctctctgcttct |
387 |
Q |
| |
|
|||||| |||||||||||| ||||| ||||||||||| |||| | |||||| |||||||||||||| || |||||| |
|
|
| T |
23490669 |
ttccacagacatggcaactatcttaacaggctcggagtcgtccacgatgagctcgacggtctttctttccgcttct |
23490744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 12 - 286
Target Start/End: Original strand, 13537587 - 13537860
Alignment:
| Q |
12 |
cctgtgtcaattaggacttgtcggacatcaacatttgccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaat |
111 |
Q |
| |
|
||||| |||||||||||| ||||||| || |||| ||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||| |
|
|
| T |
13537587 |
cctgtatcaattaggactcgtcggacgtctgcattggccattgatgctcgcacgagcaaaggaatgactgaatttgaaactccaccaggaagttttgaat |
13537686 |
T |
|
| Q |
112 |
catagaatgccaaaggtggccttcctccaaggttggaggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagat |
211 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
13537687 |
catagaatgccaaaggtggtcttcctctgtggttggagggagccagcaagttgacactcatgagttcctcaaactttctcttcatgcttcccatggagac |
13537786 |
T |
|
| Q |
212 |
gttcaatattcctcccgggatgacgttggcataggggaactgctcccaggtgcatgagtaggggggtgatttcca |
286 |
Q |
| |
|
|||| | ||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13537787 |
attcagtgttcctcccgtgatgacgttggcagaggggaactgctcccaggtgcatgagta-aggggtgatttcca |
13537860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 42790445 - 42790608
Alignment:
| Q |
12 |
cctgtgtcaattaggacttgtcggacatcaacatttgccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaat |
111 |
Q |
| |
|
||||||||||| |||||| ||||||||| | || ||||| ||||||| |||| ||| |||||||||| |||||||| |||||| ||||||||||| | |
|
|
| T |
42790445 |
cctgtgtcaatcaggactcatcggacatcgatgttggccattgatgctcatacgaacaatggaatggctgcatttgaagatccaccgggaagttctgagt |
42790544 |
T |
|
| Q |
112 |
catagaatgccaaaggtggccttcctccaaggttggaggggaccaacaagttgacactcatgag |
175 |
Q |
| |
|
| ||||| ||||| ||||| || ||||| |||||||| ||| ||| ||||||||| |||||||| |
|
|
| T |
42790545 |
cgtagaacgccaagggtggtctccctccgaggttggaaggggccagcaagttgacgctcatgag |
42790608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 246 - 323
Target Start/End: Original strand, 42790657 - 42790733
Alignment:
| Q |
246 |
gggaactgctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaatcaccgagatgttccacggacat |
323 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| ||||| |||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
42790657 |
gggaactgttcccaagtgcatgagtaggggg-tgattcccacgttgtcagggaaatcacccagctgttccacggacat |
42790733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 12 - 387
Target Start/End: Complemental strand, 24702 - 24328
Alignment:
| Q |
12 |
cctgtgtcaattaggacttgtcggacatcaacatttgccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaat |
111 |
Q |
| |
|
|||||||||| ||||||| |||||| ||| |||| |||||||||||| | || || |||||||||||| | ||||||||||| |||||||||||||||| |
|
|
| T |
24702 |
cctgtgtcaactaggactcgtcggatgtcagcattggccatcgatgcttgtactagaaaaggaatggcttagtttgaagctccgccaggaagttctgaat |
24603 |
T |
|
| Q |
112 |
catagaatgccaaaggtggccttcctccaaggttggaggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||| | | |||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
24602 |
catagaatgccaaaggtggccttcctccgtgattggagggggctagcaagttgacactcatgagttcctcgaacttcctcttcatgctccccatggagac |
24503 |
T |
|
| Q |
212 |
gttcaatattcctcccgggatgacgttggcataggggaactgctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaatcaccgagatg |
311 |
Q |
| |
|
||||| | ||||||||| ||| | ||||| |||||||||||| ||| ||||||||||| |||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
24502 |
gttcagtgttcctcccgtgataaaattggcggaggggaactgctgccacgtgcatgagta-aagggtgatttccacgttctcaggcaaatcaccgagatg |
24404 |
T |
|
| Q |
312 |
ttccacggacatggcaactttcttaccaggctcggagccgtcaatgatgagttcgacggtctttctctctgcttct |
387 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||| ||||| ||||||||||| |||||||||||||| || |||||| |
|
|
| T |
24403 |
ttccacggacatggcaactgtcttaccagactcagagccatcaatgatgagctcgacggtctttctttccgcttct |
24328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 385
Target Start/End: Original strand, 27963552 - 27963924
Alignment:
| Q |
12 |
cctgtgtcaattaggacttgtcggacatcaacatttgccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaat |
111 |
Q |
| |
|
|||||||||||||||||| ||||||| | |||| |||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
27963552 |
cctgtgtcaattaggactcgtcggacgtttccattggccatcgatgctcgtacgagcaaaggaatggctgaatttgaagctctacaaggaagttctgaat |
27963651 |
T |
|
| Q |
112 |
catagaatgccaaaggtggccttcctccaaggttggaggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagat |
211 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||| | | ||||||||||||||||||||| || || |||||||||||||| |||||||||| |
|
|
| T |
27963652 |
catagaacgccaaaggtggccttcctccgtggttggagggggctagcaagttgacactcatgagttcttcaaaatttctcttcatgctccccatggagac |
27963751 |
T |
|
| Q |
212 |
gttcaatattcctcccgggatgacgttggcataggggaactgctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaatcaccgagatg |
311 |
Q |
| |
|
||| | ||||||||| ||| |||||||| |||| ||||| ||||| ||||||||||| |||||| |||||| |||||| ||||||||||||||||| |
|
|
| T |
27963752 |
gtttagcgttcctcccgtgataacgttggcggagggaaactgttcccacgtgcatgagta-aggggtggtttccaagttgtccgggaaatcaccgagatg |
27963850 |
T |
|
| Q |
312 |
ttccacggacatggcaactttcttaccaggctcggagccgtcaatgatgagttcgacggtctttctctctgctt |
385 |
Q |
| |
|
|| ||||||||||| |||| ||||||||||||||||||||| | || ||| |||||||||||||| ||||||| |
|
|
| T |
27963851 |
tttcacggacatggaaactgccttaccaggctcggagccgtctacgacgagctcgacggtctttctttctgctt |
27963924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 12 - 326
Target Start/End: Original strand, 18733921 - 18734234
Alignment:
| Q |
12 |
cctgtgtcaattaggacttgtcggacatcaacatttgccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaat |
111 |
Q |
| |
|
|||||||||||||||||| | |||||||| | || ||||| |||||||| |||||||| |||||| |||||||||| |||||||| || |||||||||| |
|
|
| T |
18733921 |
cctgtgtcaattaggactcgacggacatcgatgttggccattgatgctcgtacgagcaacggaatgactgaatttgaggctccacctggtagttctgaat |
18734020 |
T |
|
| Q |
112 |
catagaatgccaaaggtggccttcctccaaggttggaggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagat |
211 |
Q |
| |
|
||||| |||| |||||| | || ||||||||||| ||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
18734021 |
tgtagaacgccagaggtggtttacccttgaggttggagggttccagcaagttgacacttttgagttcttcgaactttctcttcatgcttcccatggagat |
18734120 |
T |
|
| Q |
212 |
gttcaatattcctcccgggatgacgttggcataggggaactgctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaatcaccgagatg |
311 |
Q |
| |
|
||| | ||||||||| ||||||||||||| |||| ||||||||| ||||| ||||||| |||||||||||||| ||| ||| |||||||||| ||||| |
|
|
| T |
18734121 |
gttgaccgttcctcccgtgatgacgttggcagagggaaactgctcctaggtgaatgagta-gggggtgatttccaagttatcaaggaaatcacccagatg |
18734219 |
T |
|
| Q |
312 |
ttccacggacatggc |
326 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
18734220 |
ttcaacggacatggc |
18734234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 169 - 347
Target Start/End: Complemental strand, 19862132 - 19861955
Alignment:
| Q |
169 |
tcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggcataggggaactgctcccaggtgcatga |
268 |
Q |
| |
|
||||||| || ||||| || ||||||||| ||||||||||||||| | |||||| | |||| ||||||| ||||||||||||||||||||| ||| |
|
|
| T |
19862132 |
tcatgagctcttcgaatttcctcttcatgtttcccatggagatgtctagcgttcctcttgtgatgccgttggcggaggggaactgctcccaggtgcttga |
19862033 |
T |
|
| Q |
269 |
gtaggggggtgatttccacgttgtcagggaaatcaccgagatgttccacggacatggcaactttcttaccaggctcgga |
347 |
Q |
| |
|
|||| ||||||||||| | | | | |||||||||| |||||||| ||||| |||| |||| |||| | ||||||||| |
|
|
| T |
19862032 |
gtag-ggggtgatttctatatcttgaaggaaatcacccagatgttcaacggatatggaaactgtcttgcgaggctcgga |
19861955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 161; Significance: 9e-86; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 73 - 377
Target Start/End: Complemental strand, 18278678 - 18278375
Alignment:
| Q |
73 |
gaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttggaggggaccaacaagttgacactcat |
172 |
Q |
| |
|
|||||| | |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| || | |||||| | | |||||||| |||||| |
|
|
| T |
18278678 |
gaatgggtaaatttgaagctccatcgggaagttctgaatcatagaatgccaaaggtggccttcctccgtgggtagagggggctagcaagttgatactcat |
18278579 |
T |
|
| Q |
173 |
gagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggcataggggaactgctcccaggtgcatgagtag |
272 |
Q |
| |
|
||| |||| |||||||||||||||||| ||||||||| |||| | ||||||||| |||||||||||| ||||||| || ||||||||||||||||| |
|
|
| T |
18278578 |
gagatccttgaactttctcttcatgctgtccatggagacgttcggtgttcctcccgtgatgacgttggcggaggggaaatgttcccaggtgcatgagta- |
18278480 |
T |
|
| Q |
273 |
gggggtgatttccacgttgtcagggaaatcaccgagatgttccacggacatggcaactttcttaccaggctcggagccgtcaatgatgagttcgacggtc |
372 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||| |||||||||| |||||| ||||||||| |
|
|
| T |
18278479 |
acgggtgatttcgacgttgtcagggaaatcaccgagatgttccacggacttggcgactgtcttaccaggctcagagccgtcaacgatgagctcgacggtc |
18278380 |
T |
|
| Q |
373 |
tttct |
377 |
Q |
| |
|
||||| |
|
|
| T |
18278379 |
tttct |
18278375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 12 - 210
Target Start/End: Original strand, 3844110 - 3844307
Alignment:
| Q |
12 |
cctgtgtcaattaggacttgtcggacatcaacatttgccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaat |
111 |
Q |
| |
|
|||||||||||||||||| |||||| || |||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3844110 |
cctgtgtcaattaggactcgtcggatgtctgcattggccatcgatg-tcgcacgagtaaaggaatggctgaatttgaagctccaccaggaagttccgaat |
3844208 |
T |
|
| Q |
112 |
catagaatgccaaaggtggccttcctccaaggttggaggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggaga |
210 |
Q |
| |
|
|||||||| ||||| |||||||||||| ||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3844209 |
catagaattccaaacgtggccttcctctgtggttggaaggagccagcaagttgacactcatgagttcctcgaactttctcttcatgcttctcatggaga |
3844307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 48 - 273
Target Start/End: Original strand, 15311016 - 15311241
Alignment:
| Q |
48 |
gccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttgg |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| || ||||| | || ||||| ||||||||||| ||||||||| ||||| |
|
|
| T |
15311016 |
gccatcgatgctcgcacgagcaaaggaatggcaaaatttgaagctccaccgggcagttcgtagtcgtagaacgccaaaggtggtcttcctccattgttgg |
15311115 |
T |
|
| Q |
148 |
aggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggcataggg |
247 |
Q |
| |
|
||||| ||| ||||||||| |||||||| | | ||| || |||||||| ||||||||||||||| || ||||||||| | |||||||||||| |||| |
|
|
| T |
15311116 |
agggggccagcaagttgacgctcatgagctttttgaatttcttcttcatgattcccatggagatgtccagtattcctcctgtgatgacgttggcggaggg |
15311215 |
T |
|
| Q |
248 |
gaactgctcccaggtgcatgagtagg |
273 |
Q |
| |
|
||| || ||||| |||||||| |||| |
|
|
| T |
15311216 |
gaattgttcccatgtgcatgactagg |
15311241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 82 - 213
Target Start/End: Original strand, 10268088 - 10268219
Alignment:
| Q |
82 |
aatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttggaggggaccaacaagttgacactcatgagttcctc |
181 |
Q |
| |
|
||||||| |||||||| || ||||| | || ||||| |||||| |||| ||||||| | ||||||||||||||| ||||||||| |||||||| || || |
|
|
| T |
10268088 |
aatttgaggctccaccgggcagttcgtagtcgtagaacgccaaaagtggtcttcctctatggttggaggggaccagcaagttgacgctcatgagctcttc |
10268187 |
T |
|
| Q |
182 |
gaactttctcttcatgcttcccatggagatgt |
213 |
Q |
| |
|
||| || |||||||||||||||||||| |||| |
|
|
| T |
10268188 |
gaatttcctcttcatgcttcccatggaaatgt |
10268219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 324
Target Start/End: Original strand, 10268273 - 10268320
Alignment:
| Q |
277 |
gtgatttccacgttgtcagggaaatcaccgagatgttccacggacatg |
324 |
Q |
| |
|
|||||||| | |||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
10268273 |
gtgatttctatgttgtcggggaaatcacccagatgttccacggacatg |
10268320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 136; Significance: 8e-71; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 12 - 335
Target Start/End: Original strand, 251291 - 251612
Alignment:
| Q |
12 |
cctgtgtcaattaggacttgtcggacatcaacatttgccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaat |
111 |
Q |
| |
|
|||||||||||||||||| | |||||||| || |||| ||||||||||||||||||||||||||||||||||| ||||||| || |||||||| | |
|
|
| T |
251291 |
cctgtgtcaattaggactcgacggacatcgtg-ttggccactgatgctcgcacgagcaaaggaatggctgaatttgaggctccactgggtagttctgagt |
251389 |
T |
|
| Q |
112 |
catagaatgccaaaggtggccttcctccaaggttggaggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagat |
211 |
Q |
| |
|
| |||||||||| |||| | ||||||||| |||||||||| ||| || ||| || ||||| || || ||||||||||||||||||||||||||| |||| |
|
|
| T |
251390 |
cgtagaatgccataggtagtcttcctccattgttggagggggccagcaggttcacgctcattagctcttcgaactttctcttcatgcttcccatgaagat |
251489 |
T |
|
| Q |
212 |
gttcaatattcctcccgggatgacgttggcataggggaactgctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaatcaccgagatg |
311 |
Q |
| |
|
||||| |||| |||| |||||||||||| |||| ||||| ||||||||||||||||| ||||||||||||||| ||||||||||||| || ||||| |
|
|
| T |
251490 |
gttcagcgttccgcccgtgatgacgttggcggagggaaactgttcccaggtgcatgagta-gggggtgatttccacattgtcagggaaattgcccagatg |
251588 |
T |
|
| Q |
312 |
ttccacggacatggcaactttctt |
335 |
Q |
| |
|
||||||||||||||| ||| |||| |
|
|
| T |
251589 |
ttccacggacatggcgactatctt |
251612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0034 (Bit Score: 128; Significance: 5e-66; HSPs: 1)
Name: scaffold0034
Description:
Target: scaffold0034; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 35 - 350
Target Start/End: Complemental strand, 26976 - 26662
Alignment:
| Q |
35 |
gacatcaacatttgccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggcctt |
134 |
Q |
| |
|
|||||| || || |||||||||||| || |||||||||||||||| ||||||||||||||||||| ||||| || || ||||| || |||||||| ||| |
|
|
| T |
26976 |
gacatctacgttggccatcgatgcttgcgcgagcaaaggaatggcataatttgaagctccaccaggtagttcggagtcgtagaacgcgaaaggtggtctt |
26877 |
T |
|
| Q |
135 |
cctccaaggttggaggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatga |
234 |
Q |
| |
|
||||| ||||||||||||| | ||||||||| |||||||| || ||||| || ||||||||||||||||||||||||| || ||||||| ||||| |
|
|
| T |
26876 |
cctccgtggttggaggggactagcaagttgacgctcatgagctcttcgaatttcctcttcatgcttcccatggagatgtccagcgttcctcctatgatga |
26777 |
T |
|
| Q |
235 |
cgttggcataggggaactgctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaatcaccgagatgttccacggacatggcaactttct |
334 |
Q |
| |
|
|||||||| ||||||||||| || || |||||||||| | |||||||||| | | |||||||||||||| || |||||||| |||||||||||| ||| |
|
|
| T |
26776 |
cgttggcagaggggaactgcacctagctgcatgagta-gcgggtgatttctatatcttcagggaaatcacccagttgttccacagacatggcaactgtct |
26678 |
T |
|
| Q |
335 |
taccaggctcggagcc |
350 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
26677 |
tgccaggctcggagcc |
26662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0433 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: scaffold0433
Description:
Target: scaffold0433; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 12 - 210
Target Start/End: Complemental strand, 11050 - 10853
Alignment:
| Q |
12 |
cctgtgtcaattaggacttgtcggacatcaacatttgccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaat |
111 |
Q |
| |
|
|||||||||||||||||| |||||| || |||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
11050 |
cctgtgtcaattaggactcgtcggatgtctgcattggccatcgatg-tcgcacgagtaaaggaatggctgaatttgaagctccaccaggaagttccgaat |
10952 |
T |
|
| Q |
112 |
catagaatgccaaaggtggccttcctccaaggttggaggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggaga |
210 |
Q |
| |
|
|||||||| ||||| |||||||||||| ||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10951 |
catagaattccaaacgtggccttcctctgtggttggaaggagccagcaagttgacactcatgagttcctcgaactttctcttcatgcttctcatggaga |
10853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 102 - 326
Target Start/End: Original strand, 23927793 - 23928015
Alignment:
| Q |
102 |
agttctgaatcatagaatgccaaaggtggccttcctccaaggttggaggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttc |
201 |
Q |
| |
|
|||||||| || ||||| ||||||||| | ||||||||| ||||||||||| ||| || ||||||||||||||| || ||||| |||||||||||||||| |
|
|
| T |
23927793 |
agttctgagtcgtagaacgccaaaggtagtcttcctccacggttggagggggccagcaggttgacactcatgagctcttcgaattttctcttcatgcttc |
23927892 |
T |
|
| Q |
202 |
ccatggagatgttcaatattcctcccgggatgacgttggcataggggaactgctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaat |
301 |
Q |
| |
|
||||| ||||||||| ||||||||| |||||||||||| |||| ||||| ||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
23927893 |
ccatgcagatgttcagcgttcctcccgtgatgacgttggcggagggaaactgttcccaggtgcatgtgta--ggggtgatttccacgttgtcagggaaat |
23927990 |
T |
|
| Q |
302 |
caccgagatgttccacggacatggc |
326 |
Q |
| |
|
| || ||||||||||| ||||||| |
|
|
| T |
23927991 |
cgcccagatgttccacaaacatggc |
23928015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 14 - 139
Target Start/End: Original strand, 27345460 - 27345585
Alignment:
| Q |
14 |
tgtgtcaattaggacttgtcggacatcaacatttgccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatca |
113 |
Q |
| |
|
||||||||| |||||| |||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
27345460 |
tgtgtcaatcaggactcgtcgaacgtcaacatttgccatcgatgcttgcacgagcaaaggaatggctgaatttgaagccccaccgggaagttctgaatca |
27345559 |
T |
|
| Q |
114 |
tagaatgccaaaggtggccttcctcc |
139 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
27345560 |
tagaatgccaaaggtggccttcctcc |
27345585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0192 (Bit Score: 94; Significance: 9e-46; HSPs: 1)
Name: scaffold0192
Description:
Target: scaffold0192; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 48 - 302
Target Start/End: Original strand, 8027 - 8286
Alignment:
| Q |
48 |
gccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttgg |
147 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| | |||| ||| ||||| || || ||||||||||| ||||| |||||||| | ||||| |
|
|
| T |
8027 |
gccatcgatgctcgcacgagcaaatgaatggctgaatttgaacccccactaggcagttcagagtcgtagaatgccaagggtggtcttcctccgatgttgg |
8126 |
T |
|
| Q |
148 |
ag------gggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggc |
241 |
Q |
| |
|
| ||||||| ||| |||||||||||||| ||||| || ||||| ||||||||||| || ||||| || | | ||||||||| |||||||||||| |
|
|
| T |
8127 |
aatcaaaagggaccagcaaattgacactcatgagctcctcaaattttctattcatgcttcctatagagatatttactgttcctcccgtgatgacgttggc |
8226 |
T |
|
| Q |
242 |
ataggggaactgctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaatc |
302 |
Q |
| |
|
| | |||||||| ||||||||||||||||| || ||||||||| |||||||||||||| |
|
|
| T |
8227 |
agaagggaactgttcccaggtgcatgagta-aggtacgatttccacattgtcagggaaatc |
8286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 12 - 351
Target Start/End: Original strand, 386507 - 386845
Alignment:
| Q |
12 |
cctgtgtcaattaggacttgtcggacatcaacatttgccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaat |
111 |
Q |
| |
|
||||||||||| ||||||||||||| ||| | || ||||||||||||| || |||||||| ||||| |||||||| ||||||| ||| || || | | |
|
|
| T |
386507 |
cctgtgtcaatcaggacttgtcggaaatctgcgttggccatcgatgctcatacaagcaaaggtatggcagaatttgaggctccactaggtagctccaagt |
386606 |
T |
|
| Q |
112 |
catagaatgccaaaggtggccttcctccaaggttggaggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagat |
211 |
Q |
| |
|
| | ||| | || ||||| |||||||| ||||||||||||| || ||||| || ||| |||| || || || || ||||||||||||||||||||||| |
|
|
| T |
386607 |
cgtggaacgtcaggggtggtcttcctccgtggttggaggggacaaaaaagttaacgctcgtgagctcttcaaatttcctcttcatgcttcccatggagat |
386706 |
T |
|
| Q |
212 |
gttcaatattcctcccgggatgacgttggcataggggaactgctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaatcaccgagatg |
311 |
Q |
| |
|
|| ||| |||||| | ||||| |||||| |||||||||| |||||||| |||||||| ||||| |||||| | |||||| ||||||||| | ||||| |
|
|
| T |
386707 |
gtccaacgttcctctagtgatgatgttggcggaggggaactgttcccaggttcatgagta-gggggcgatttcaaggttgtcggggaaatcatctagatg |
386805 |
T |
|
| Q |
312 |
ttccacggacatggcaactttcttaccaggctcggagccg |
351 |
Q |
| |
|
|||||| |||||||||| | || ||||||||||||||| |
|
|
| T |
386806 |
ttccacaaacatggcaacagttttgccaggctcggagccg |
386845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0063 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0063
Description:
Target: scaffold0063; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 144 - 326
Target Start/End: Complemental strand, 39705 - 39524
Alignment:
| Q |
144 |
ttggaggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggcat |
243 |
Q |
| |
|
||||||||||||| || |||||| ||||||||||| || || ||||| ||||||||||||||||||||||||| ||||||||| |||||||||| | |
|
|
| T |
39705 |
ttggaggggaccagcaggttgacgctcatgagttcttcaaaatttcttttcatgcttcccatggagatgttcatcgttcctcccgtgatgacgttgacgg |
39606 |
T |
|
| Q |
244 |
aggggaactgctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaatcaccgagatgttccacggacatggc |
326 |
Q |
| |
|
| || ||||| |||||| ||||||||||||| || ||||||||||||||| |||||||| | ||| |||||| ||||||| |
|
|
| T |
39605 |
atggaaactgttcccagctgcatgagtagggtac-gacttccacgttgtcaggaaaatcacccaaatgatccacgtacatggc |
39524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 142 - 235
Target Start/End: Original strand, 24039908 - 24040001
Alignment:
| Q |
142 |
ggttggaggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgac |
235 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||| || ||||| || ||||||||||||||||||||||||| ||| ||||||| | |||||| |
|
|
| T |
24039908 |
ggttggaggggaccagcaagttgacgctcatgagctcttcgaatttcctcttcatgcttcccatggagatgtccaacgttcctcctgtgatgac |
24040001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 16093091 - 16093051
Alignment:
| Q |
48 |
gccatcgatgctcgcacgagcaaaggaatggctgaatttga |
88 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
16093091 |
gccattgatgctcgcccgagcaaaggaatggctgaatttga |
16093051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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