View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8949_low_34 (Length: 356)
Name: NF8949_low_34
Description: NF8949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8949_low_34 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 356
Target Start/End: Original strand, 15468535 - 15468873
Alignment:
| Q |
18 |
tactattcaaatttcaaagatgataaaataactccaagtttcaaatatggtttcaatgcaaatatatggtcaagaataataccaatcaaaccatgcaaat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
15468535 |
tactattcaaatttcaaagatgataaaataacttcaagtttcaaatatggtttcagtgcaaatatatggtcaagaataataccaatcaaaccgtgcaaat |
15468634 |
T |
|
| Q |
118 |
gaaaaatgatatgattcgcacatttcttcaagtttcaaatatggtttcagtggaatatttgattatgagcaccaataaattaatgtgtagacactaaggg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15468635 |
gaaaaatgatatgattcgcacatttcttcaagtttcaaatgtggttttagtggaatatttgattatgagcaccaataaattaatgtgtagacactaaggg |
15468734 |
T |
|
| Q |
218 |
ggacttaatttgacttgaagatgacatatcaatcacaaagtaagtgtttgactctagagacgtggagcttaatttcaaccattaccaaattttggatcaa |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
15468735 |
ggacttaatttgacttgaagatgacatatcaatcacaaagtaagtgtttgactctagagacgtggggcttaacttcaaccattaccaaattttggatcaa |
15468834 |
T |
|
| Q |
318 |
attaatcccactccaactttacaaacaatatgtttggtg |
356 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
15468835 |
attaatccctctccaactttacaaacaatatgtttggtg |
15468873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 107
Target Start/End: Complemental strand, 15465509 - 15465478
Alignment:
| Q |
76 |
caaatatatggtcaagaataataccaatcaaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
15465509 |
caaatatatggtcaagaataataccaatcaaa |
15465478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University