View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8949_low_36 (Length: 337)

Name: NF8949_low_36
Description: NF8949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8949_low_36
NF8949_low_36
[»] chr6 (6 HSPs)
chr6 (1-333)||(2386453-2386784)
chr6 (122-170)||(24333044-24333092)
chr6 (123-164)||(3525236-3525277)
chr6 (125-166)||(4308887-4308928)
chr6 (125-162)||(31776191-31776228)
chr6 (124-156)||(30536883-30536915)
[»] chr2 (7 HSPs)
chr2 (124-166)||(37276854-37276896)
chr2 (125-166)||(37419586-37419627)
chr2 (124-166)||(1830149-1830191)
chr2 (124-170)||(15370241-15370287)
chr2 (126-163)||(40059381-40059418)
chr2 (126-163)||(40085281-40085318)
chr2 (127-163)||(43985322-43985358)
[»] chr4 (11 HSPs)
chr4 (123-156)||(28615454-28615487)
chr4 (123-166)||(679401-679444)
chr4 (123-170)||(41433481-41433528)
chr4 (125-168)||(53034718-53034761)
chr4 (124-166)||(22662169-22662211)
chr4 (124-166)||(22666648-22666690)
chr4 (123-164)||(27043747-27043788)
chr4 (125-158)||(52428782-52428815)
chr4 (123-155)||(7367971-7368003)
chr4 (124-164)||(25571371-25571411)
chr4 (125-173)||(54575522-54575570)
[»] chr3 (5 HSPs)
chr3 (123-164)||(25447162-25447203)
chr3 (123-164)||(36507009-36507050)
chr3 (123-165)||(47903997-47904039)
chr3 (127-164)||(26911703-26911740)
chr3 (128-164)||(33405114-33405150)
[»] chr8 (3 HSPs)
chr8 (127-170)||(39551130-39551173)
chr8 (123-156)||(10727464-10727497)
chr8 (124-164)||(38602439-38602479)
[»] chr7 (5 HSPs)
chr7 (123-170)||(28691753-28691800)
chr7 (123-170)||(41040271-41040318)
chr7 (127-164)||(9210933-9210970)
chr7 (123-164)||(37064385-37064426)
chr7 (124-164)||(44822070-44822110)
[»] chr5 (6 HSPs)
chr5 (127-174)||(18286893-18286940)
chr5 (124-166)||(3280654-3280696)
chr5 (123-164)||(32197845-32197886)
chr5 (123-155)||(10638452-10638484)
chr5 (124-156)||(32010065-32010097)
chr5 (124-156)||(40335791-40335823)
[»] chr1 (4 HSPs)
chr1 (131-170)||(4200340-4200379)
chr1 (124-174)||(37241739-37241788)
chr1 (125-166)||(6292602-6292643)
chr1 (123-156)||(30013996-30014029)


Alignment Details
Target: chr6 (Bit Score: 301; Significance: 1e-169; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 2386453 - 2386784
Alignment:
Q  1 gatgccatgatcttgctagggctgttgttgtcaatgctgcaagtccctataggaagaaaacacaagaaaaaatgtcaataactagtgaagaaaaagttga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2386453 gatgccatgatcttgctagggctgttgttgtcaatgctgcaagtccctataggaagaaaacacaagaaaaaatgtcaataactagtgaagaaaaagttga 2386552  T
Q  101 atattcaaattaacagtaactttctgtttggattgacttatttaagtttatctactgatataagcatttgcgagcctttttgagaatatacagaaacagc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | | |||||||||||||||||||||||||||||||||||||    
T  2386553 atattcaaattaacagtaactttctgtttggattgacttatttaagtttatctacagaaaca-gcatttgcgagcctttttgagaatatacagaaacagc 2386651  T
Q  201 ttaaaaaatatccatgtgtagttttcagcttactttcataagccctcaaggactagcttatgataacatcttatatgaattgtgtgtttctcaaattagt 300  Q
    ||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2386652 ttaaaaaatgtccattcgtagttttcagcttactttcataagccctcaaggactagcttatgataacatcttatatgaattgtgtgtttctcaaattagt 2386751  T
Q  301 agcattgtcgttgtgtcagtgtctgtgtcgtgt 333  Q
    |||||||||||||||||||||||||||||||||    
T  2386752 agcattgtcgttgtgtcagtgtctgtgtcgtgt 2386784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 24333092 - 24333044
Alignment:
Q  122 ttctgtttggattgacttatttaagtttatctactgatataagcatttg 170  Q
    |||||||||||||||| ||||| ||||||| |||||| |||||||||||    
T  24333092 ttctgtttggattgacatatttcagtttatgtactgacataagcatttg 24333044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 3525277 - 3525236
Alignment:
Q  123 tctgtttggattgacttatttaagtttatctactgatataag 164  Q
    |||||||||||||||| ||||||||||||||| ||| |||||    
T  3525277 tctgtttggattgactaatttaagtttatctagtgacataag 3525236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 4308928 - 4308887
Alignment:
Q  125 tgtttggattgacttatttaagtttatctactgatataagca 166  Q
    ||||||||||| ||||||| |||||||||||||| |||||||    
T  4308928 tgtttggattggcttatttgagtttatctactgacataagca 4308887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 162
Target Start/End: Original strand, 31776191 - 31776228
Alignment:
Q  125 tgtttggattgacttatttaagtttatctactgatata 162  Q
    ||||||||||||||||||| || |||||||||||||||    
T  31776191 tgtttggattgacttatttgagcttatctactgatata 31776228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 30536883 - 30536915
Alignment:
Q  124 ctgtttggattgacttatttaagtttatctact 156  Q
    |||||||||||||||||||| ||||||||||||    
T  30536883 ctgtttggattgacttatttgagtttatctact 30536915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 166
Target Start/End: Complemental strand, 37276896 - 37276854
Alignment:
Q  124 ctgtttggattgacttatttaagtttatctactgatataagca 166  Q
    |||||||||| |||||||||||||||||||||| |||||||||    
T  37276896 ctgtttggatcgacttatttaagtttatctactaatataagca 37276854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 37419586 - 37419627
Alignment:
Q  125 tgtttggattgacttatttaagtttatctactgatataagca 166  Q
    ||||||||||||||||||| |||||||||||| |||||||||    
T  37419586 tgtttggattgacttatttgagtttatctacttatataagca 37419627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 166
Target Start/End: Complemental strand, 1830191 - 1830149
Alignment:
Q  124 ctgtttggattgacttatttaagtttatctactgatataagca 166  Q
    |||||||||||||||||||| ||||||| |||||| |||||||    
T  1830191 ctgtttggattgacttatttgagtttatttactgacataagca 1830149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 170
Target Start/End: Original strand, 15370241 - 15370287
Alignment:
Q  124 ctgtttggattgacttatttaagtttatctactgatataagcatttg 170  Q
    |||||||||||||||||||| || ||||||||||  |||||||||||    
T  15370241 ctgtttggattgacttatttgagcttatctactggcataagcatttg 15370287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 163
Target Start/End: Original strand, 40059381 - 40059418
Alignment:
Q  126 gtttggattgacttatttaagtttatctactgatataa 163  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  40059381 gtttggattgacttatttgagtttatctactgacataa 40059418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 163
Target Start/End: Original strand, 40085281 - 40085318
Alignment:
Q  126 gtttggattgacttatttaagtttatctactgatataa 163  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  40085281 gtttggattgacttatttgagtttatctactgacataa 40085318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 163
Target Start/End: Complemental strand, 43985358 - 43985322
Alignment:
Q  127 tttggattgacttatttaagtttatctactgatataa 163  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  43985358 tttggatcgacttatttaagtttatctactgacataa 43985322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 156
Target Start/End: Complemental strand, 28615487 - 28615454
Alignment:
Q  123 tctgtttggattgacttatttaagtttatctact 156  Q
    ||||||||||||||||||||||||||||||||||    
T  28615487 tctgtttggattgacttatttaagtttatctact 28615454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 166
Target Start/End: Complemental strand, 679444 - 679401
Alignment:
Q  123 tctgtttggattgacttatttaagtttatctactgatataagca 166  Q
    |||||||| |||||||||||| ||||||||||||| ||||||||    
T  679444 tctgtttgaattgacttatttgagtttatctactggtataagca 679401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 170
Target Start/End: Complemental strand, 41433528 - 41433481
Alignment:
Q  123 tctgtttggattgacttatttaagtttatctactgatataagcatttg 170  Q
    |||||||| |||||||||||| ||||||||| |||| |||||||||||    
T  41433528 tctgtttgaattgacttatttgagtttatctcctgacataagcatttg 41433481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 168
Target Start/End: Original strand, 53034718 - 53034761
Alignment:
Q  125 tgtttggattgacttatttaagtttatctactgatataagcatt 168  Q
    ||||||| ||||||||||| || |||||||||||||||||||||    
T  53034718 tgtttggtttgacttatttgagcttatctactgatataagcatt 53034761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 166
Target Start/End: Original strand, 22662169 - 22662211
Alignment:
Q  124 ctgtttggattgacttatttaagtttatctactgatataagca 166  Q
    |||||||||||||||||||| |||||||||||| | |||||||    
T  22662169 ctgtttggattgacttatttgagtttatctactaacataagca 22662211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 166
Target Start/End: Original strand, 22666648 - 22666690
Alignment:
Q  124 ctgtttggattgacttatttaagtttatctactgatataagca 166  Q
    |||||||||||||||||||| |||||||||||| | |||||||    
T  22666648 ctgtttggattgacttatttgagtttatctactaacataagca 22666690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 27043747 - 27043788
Alignment:
Q  123 tctgtttggattgacttatttaagtttatctactgatataag 164  Q
    ||||||||||||||||||||| || ||||||||||| |||||    
T  27043747 tctgtttggattgacttatttgagcttatctactgacataag 27043788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 52428815 - 52428782
Alignment:
Q  125 tgtttggattgacttatttaagtttatctactga 158  Q
    ||||||||||||||||||| ||||||||||||||    
T  52428815 tgtttggattgacttatttgagtttatctactga 52428782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 7367971 - 7368003
Alignment:
Q  123 tctgtttggattgacttatttaagtttatctac 155  Q
    ||||||||||||||||||||| |||||||||||    
T  7367971 tctgtttggattgacttatttgagtttatctac 7368003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 25571411 - 25571371
Alignment:
Q  124 ctgtttggattgacttatttaagtttatctactgatataag 164  Q
    |||||||||||| ||||||| |||||||||||||| |||||    
T  25571411 ctgtttggattggcttatttgagtttatctactgacataag 25571371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 54575522 - 54575570
Alignment:
Q  125 tgtttggattgacttatttaagtttatctactgatataagcatttgcga 173  Q
    ||||||||||||||||||| ||||||| ||  || ||||||||||||||    
T  54575522 tgtttggattgacttatttgagtttatttatagacataagcatttgcga 54575570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 25447162 - 25447203
Alignment:
Q  123 tctgtttggattgacttatttaagtttatctactgatataag 164  Q
    ||||||||||||||||||||| |||||||||||||| |||||    
T  25447162 tctgtttggattgacttatttgagtttatctactgacataag 25447203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 36507009 - 36507050
Alignment:
Q  123 tctgtttggattgacttatttaagtttatctactgatataag 164  Q
    ||||||||||||| ||||||| ||||||||||||||||||||    
T  36507009 tctgtttggattggcttatttgagtttatctactgatataag 36507050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 165
Target Start/End: Original strand, 47903997 - 47904039
Alignment:
Q  123 tctgtttggattgacttatttaagtttatctactgatataagc 165  Q
    ||||||||||||||||||||| ||||||||  |||||||||||    
T  47903997 tctgtttggattgacttatttgagtttatcctctgatataagc 47904039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 26911740 - 26911703
Alignment:
Q  127 tttggattgacttatttaagtttatctactgatataag 164  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  26911740 tttggattgacttatttgagtttatctactgacataag 26911703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 33405114 - 33405150
Alignment:
Q  128 ttggattgacttatttaagtttatctactgatataag 164  Q
    |||||||||||||||| |||||||||||||| |||||    
T  33405114 ttggattgacttatttgagtttatctactgacataag 33405150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 170
Target Start/End: Original strand, 39551130 - 39551173
Alignment:
Q  127 tttggattgacttatttaagtttatctactgatataagcatttg 170  Q
    ||||||||||||||||| || |||||||| ||||||||||||||    
T  39551130 tttggattgacttatttgagattatctacggatataagcatttg 39551173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 156
Target Start/End: Complemental strand, 10727497 - 10727464
Alignment:
Q  123 tctgtttggattgacttatttaagtttatctact 156  Q
    ||||||||||||||||||||| ||||||||||||    
T  10727497 tctgtttggattgacttatttgagtttatctact 10727464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 38602479 - 38602439
Alignment:
Q  124 ctgtttggattgacttatttaagtttatctactgatataag 164  Q
    |||||||||||||||||||| || ||||||||||| |||||    
T  38602479 ctgtttggattgacttatttgagcttatctactgacataag 38602439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 170
Target Start/End: Original strand, 28691753 - 28691800
Alignment:
Q  123 tctgtttggattgacttatttaagtttatctactgatataagcatttg 170  Q
    ||||||||||||||||||||| ||||||||| || | |||||||||||    
T  28691753 tctgtttggattgacttatttgagtttatctgctaacataagcatttg 28691800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 170
Target Start/End: Complemental strand, 41040318 - 41040271
Alignment:
Q  123 tctgtttggattgacttatttaagtttatctactgatataagcatttg 170  Q
    |||||||| ||||| |||||| |||||||||||||||||||| |||||    
T  41040318 tctgtttgaattgatttatttgagtttatctactgatataagtatttg 41040271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 9210970 - 9210933
Alignment:
Q  127 tttggattgacttatttaagtttatctactgatataag 164  Q
    ||||||||||||||||| || |||||||||||||||||    
T  9210970 tttggattgacttatttgagcttatctactgatataag 9210933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 37064385 - 37064426
Alignment:
Q  123 tctgtttggattgacttatttaagtttatctactgatataag 164  Q
    ||||||||||||||||||||| |  |||||||||||||||||    
T  37064385 tctgtttggattgacttatttgatcttatctactgatataag 37064426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 44822110 - 44822070
Alignment:
Q  124 ctgtttggattgacttatttaagtttatctactgatataag 164  Q
    |||||||||||||||||||| ||||||||| |||| |||||    
T  44822110 ctgtttggattgacttatttgagtttatctgctgacataag 44822070  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 18286940 - 18286893
Alignment:
Q  127 tttggattgacttatttaagtttatctactgatataagcatttgcgag 174  Q
    |||||||||| |||||  |||||||||||| |||||||||||||||||    
T  18286940 tttggattgaattattcgagtttatctactaatataagcatttgcgag 18286893  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 166
Target Start/End: Original strand, 3280654 - 3280696
Alignment:
Q  124 ctgtttggattgacttatttaagtttatctactgatataagca 166  Q
    ||||||||||||||||||||||  |||||||||||| ||||||    
T  3280654 ctgtttggattgacttatttaaacttatctactgatttaagca 3280696  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 32197886 - 32197845
Alignment:
Q  123 tctgtttggattgacttatttaagtttatctactgatataag 164  Q
    ||||||||||||||||| ||| |||||||||||||| |||||    
T  32197886 tctgtttggattgacttttttgagtttatctactgacataag 32197845  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 10638452 - 10638484
Alignment:
Q  123 tctgtttggattgacttatttaagtttatctac 155  Q
    |||||||||||||||||||||||| ||||||||    
T  10638452 tctgtttggattgacttatttaagattatctac 10638484  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 32010097 - 32010065
Alignment:
Q  124 ctgtttggattgacttatttaagtttatctact 156  Q
    |||||||||||||||||||| ||||||||||||    
T  32010097 ctgtttggattgacttatttgagtttatctact 32010065  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 40335791 - 40335823
Alignment:
Q  124 ctgtttggattgacttatttaagtttatctact 156  Q
    |||||||||||||||||||| ||||||||||||    
T  40335791 ctgtttggattgacttatttgagtttatctact 40335823  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 131 - 170
Target Start/End: Complemental strand, 4200379 - 4200340
Alignment:
Q  131 gattgacttatttaagtttatctactgatataagcatttg 170  Q
    ||||||||||||| ||||||| ||||||||||||||||||    
T  4200379 gattgacttattttagtttatatactgatataagcatttg 4200340  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 174
Target Start/End: Original strand, 37241739 - 37241788
Alignment:
Q  124 ctgtttggattgacttatttaagtttatctactgatataagcatttgcgag 174  Q
    ||||||||||||||||||||||| ||||||||||  ||||||| |||||||    
T  37241739 ctgtttggattgacttatttaagcttatctactg-cataagcacttgcgag 37241788  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 6292643 - 6292602
Alignment:
Q  125 tgtttggattgacttatttaagtttatctactgatataagca 166  Q
    ||||||||||||||||||| || ||||||||||| |||||||    
T  6292643 tgtttggattgacttatttgagcttatctactgacataagca 6292602  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 156
Target Start/End: Original strand, 30013996 - 30014029
Alignment:
Q  123 tctgtttggattgacttatttaagtttatctact 156  Q
    ||||||||||||||||||||| ||||||||||||    
T  30013996 tctgtttggattgacttatttgagtttatctact 30014029  T

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