View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8949_low_38 (Length: 337)
Name: NF8949_low_38
Description: NF8949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8949_low_38 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 319
Target Start/End: Original strand, 122619 - 122921
Alignment:
| Q |
16 |
agacagcagatagcggtggctgcaagcacatagtgaatgtgaaattaacgctcgatggaaaaatatgacggatatagtaaaacaaagacatttgataaac |
115 |
Q |
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| T |
122619 |
agacagcagatagcagtggctgcaagcacatagtgaatgtgaaattaatgctcgatggaaaaatatgactgatatagtaaaacaaagacatttgataaac |
122718 |
T |
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| Q |
116 |
ttacagttgggatgaccgataagatgtccagctgagaaagagtggtataatctggcatttgggacaaacctacctgacaaaattcaaattccaaaaatgt |
215 |
Q |
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| T |
122719 |
ttacagttgggatgaccgataagatgtccagctgagaaagagtggtataatctggcatttgggacgaacctacctgacaaaattcaaattccaaaaatgt |
122818 |
T |
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| Q |
216 |
tgtgttaacaaatattaaatacataagaatacattttatatgatgtaaaagcaaaatatataatttacctcgcctgtaccaacattctgaatagggagag |
315 |
Q |
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| T |
122819 |
tgtgttaacaaatattaaatatgtaagaatacattttatatgatgt-aaagcaaaatatataatttacctcgcctgtaccaacattctgaatagggagag |
122917 |
T |
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| Q |
316 |
cttg |
319 |
Q |
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|||| |
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| T |
122918 |
cttg |
122921 |
T |
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