View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8949_low_40 (Length: 334)
Name: NF8949_low_40
Description: NF8949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8949_low_40 |
 | |
|
| [»] chr7 (6 HSPs) |
| |
|
| [»] chr6 (6 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
| |
|
| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 3e-82; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 4287405 - 4287567
Alignment:
| Q |
19 |
ctcactcactccatctttagcgaggtctctaagaaaatgaaatctcaaatctatatgtttaacgattaaattgttttccggaaatatttggagaagatta |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
4287405 |
ctcactcactccatctttagcgaggtctctaagaaaatgaaatctcaaatctatatgtttaacgattgaattgttttccggaaatatttggagaagaata |
4287504 |
T |
|
| Q |
119 |
gtttctacattgttaaagataatagaaaaagagagtaacaatattttttacttaactactact |
181 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4287505 |
gtttctacattgttaaagataatagaaaaagagagtaacaatattttttacttaactactact |
4287567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 223 - 334
Target Start/End: Original strand, 8123455 - 8123566
Alignment:
| Q |
223 |
atgactcaccttagtctagaaggatctagaaggtatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtc |
322 |
Q |
| |
|
|||||| |||||| |||||||||||||||||| | | |||||||||||| |||||||||||||| |||| ||||||| |||||||||||||||||||||| |
|
|
| T |
8123455 |
atgactgaccttaatctagaaggatctagaagatctattgttaggggataatattgagtatgttagggtacacttatcttattatgagtatgcacaagtc |
8123554 |
T |
|
| Q |
323 |
tatataagcatt |
334 |
Q |
| |
|
|||||||||||| |
|
|
| T |
8123555 |
tatataagcatt |
8123566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 223 - 334
Target Start/End: Original strand, 671389 - 671500
Alignment:
| Q |
223 |
atgactcaccttagtctagaaggatctagaaggtatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtc |
322 |
Q |
| |
|
||||||||||||| |||||||||||| | ||| ||| |||||||||||| |||||||||| ||| |||| ||||||| ||||||||||||||||||||| |
|
|
| T |
671389 |
atgactcaccttaatctagaaggatccataagatatattgttaggggataatattgagtaggttagggtacacttatcttattatgagtatgcacaagtt |
671488 |
T |
|
| Q |
323 |
tatataagcatt |
334 |
Q |
| |
|
||||||| |||| |
|
|
| T |
671489 |
tatataatcatt |
671500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 7e-40; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 223 - 334
Target Start/End: Complemental strand, 42513285 - 42513174
Alignment:
| Q |
223 |
atgactcaccttagtctagaaggatctagaaggtatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtc |
322 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| | |||||||||||| |||||||||||||| |||| ||||||| |||||||||||||||||||||| |
|
|
| T |
42513285 |
atgactcaccttaatctagaaggatctagaaggtctattgttaggggataatattgagtatgttagggtacacttatcttattatgagtatgcacaagtc |
42513186 |
T |
|
| Q |
323 |
tatataagcatt |
334 |
Q |
| |
|
|||||||||||| |
|
|
| T |
42513185 |
tatataagcatt |
42513174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 223 - 334
Target Start/End: Complemental strand, 38572434 - 38572323
Alignment:
| Q |
223 |
atgactcaccttagtctagaaggatctagaaggtatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtc |
322 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||| ||| |||| ||||||| ||||||||| ||||| |||||| |
|
|
| T |
38572434 |
atgactcaccttaatctaaaaggatctagaaggtatcttgttaggggataatattgagtaagttagggtacacttatcttattatgaatatgcccaagtc |
38572335 |
T |
|
| Q |
323 |
tatataagcatt |
334 |
Q |
| |
|
||||||| |||| |
|
|
| T |
38572334 |
tatataaacatt |
38572323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 267 - 330
Target Start/End: Original strand, 41712265 - 41712328
Alignment:
| Q |
267 |
gggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtctatataag |
330 |
Q |
| |
|
||||| ||||| |||||||| |||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
41712265 |
gggataatattaagtatgttagggtgcacttattttattatgagtaggcacaagtctatataag |
41712328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 19990263 - 19990314
Alignment:
| Q |
28 |
tccatctttagcgaggtctctaagaaaatgaaatctcaaatctatatgttta |
79 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
19990263 |
tccatctttaatgaggtcactaagaaaatgaaatctcaaatcaatatgttta |
19990314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 334
Target Start/End: Original strand, 49017102 - 49017165
Alignment:
| Q |
271 |
tgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtctatataagcatt |
334 |
Q |
| |
|
|||||||||||||||| | ||||||||| ||||||||| ||| ||||||| | |||||||||| |
|
|
| T |
49017102 |
tgatattgagtatgttatgatgcacttatcttattatgactatccacaagtttgtataagcatt |
49017165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 217
Target Start/End: Complemental strand, 38572495 - 38572462
Alignment:
| Q |
184 |
tgataggatatttagaataatgagtactaatgtg |
217 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |
|
|
| T |
38572495 |
tgatagtatatttagaataatgagtactaatgtg |
38572462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 223 - 330
Target Start/End: Original strand, 30911982 - 30912089
Alignment:
| Q |
223 |
atgactcaccttagtctagaaggatctagaaggtatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtc |
322 |
Q |
| |
|
||||||||||||| |||||||||||||| || |||||||||||||||| |||||||||||||| |||||||||||| ||||| |||||||||||||||| |
|
|
| T |
30911982 |
atgactcaccttaatctagaaggatctaaaatatatcttgttaggggataatattgagtatgttagggtgcacttattttattgtgagtatgcacaagtc |
30912081 |
T |
|
| Q |
323 |
tatataag |
330 |
Q |
| |
|
|||||||| |
|
|
| T |
30912082 |
tatataag |
30912089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 246 - 334
Target Start/End: Original strand, 36326442 - 36326528
Alignment:
| Q |
246 |
atctagaaggtatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtctatataagcatt |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
36326442 |
atctagaaggtatcttgttaggggatgatattgagtatgttagggtgcacttaggttattatgagtatg--caagtctatataagcatt |
36326528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 225 - 327
Target Start/End: Complemental strand, 55211905 - 55211803
Alignment:
| Q |
225 |
gactcaccttagtctagaaggatctagaaggtatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtcta |
324 |
Q |
| |
|
|||||| |||| |||| ||||||| | ||||||| ||| |||||||| |||||||||||||| |||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
55211905 |
gactcatcttaatctaaaaggatccataaggtatattggtaggggataatattgagtatgttagggtgcacttatcttattatgaatatgcacaagtcta |
55211806 |
T |
|
| Q |
325 |
tat |
327 |
Q |
| |
|
||| |
|
|
| T |
55211805 |
tat |
55211803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 223 - 319
Target Start/End: Original strand, 32414663 - 32414759
Alignment:
| Q |
223 |
atgactcaccttagtctagaaggatctagaaggtatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaa |
319 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||| |||| |||||| ||||| |||||||| ||||||||||| ||||| ||||| ||||||| |
|
|
| T |
32414663 |
atgactcaccttaacctataaggatctagaaggtatattgtctggggataatattaagtatgttatggtgcacttatcttattttgagtttgcacaa |
32414759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 217
Target Start/End: Original strand, 30911921 - 30911954
Alignment:
| Q |
184 |
tgataggatatttagaataatgagtactaatgtg |
217 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
30911921 |
tgataggatacttagaataatgagtactaatgtg |
30911954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 218
Target Start/End: Complemental strand, 55211970 - 55211934
Alignment:
| Q |
182 |
actgataggatatttagaataatgagtactaatgtgg |
218 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
55211970 |
actgataggatatttagaataaggagcactaatgtgg |
55211934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 223 - 334
Target Start/End: Original strand, 4834644 - 4834757
Alignment:
| Q |
223 |
atgactcaccttagtctagaaggatctagaagg--tatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaag |
320 |
Q |
| |
|
||||||||||||| |||||||||||||| |||| |||||| ||||||||| |||||||||||||| |||||||||||| |||||||||||||||| ||| |
|
|
| T |
4834644 |
atgactcaccttaatctagaaggatctaaaaggagtatcttattaggggataatattgagtatgttagggtgcacttatcttattatgagtatgcataag |
4834743 |
T |
|
| Q |
321 |
tctatataagcatt |
334 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
4834744 |
tctatataagcatt |
4834757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 223 - 334
Target Start/End: Original strand, 7415566 - 7415677
Alignment:
| Q |
223 |
atgactcaccttagtctagaaggatctagaaggtatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtc |
322 |
Q |
| |
|
|||||||| |||| | ||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||| |||||||||||| || ||||| |
|
|
| T |
7415566 |
atgactcatcttaatttagaaggatctagaaattatcttgttaggggataatattgagtatgttatggtgcacttatcttattatgagtacacataagtc |
7415665 |
T |
|
| Q |
323 |
tatataagcatt |
334 |
Q |
| |
|
|||||||||||| |
|
|
| T |
7415666 |
tatataagcatt |
7415677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 223 - 334
Target Start/End: Original strand, 33242776 - 33242886
Alignment:
| Q |
223 |
atgactcaccttagtctagaaggatctagaaggtatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtc |
322 |
Q |
| |
|
|||| ||| ||||||||| |||||| |||||| || |||||||||||| |||||||||||||| || ||||||||| |||||||||||||||||||||| |
|
|
| T |
33242776 |
atgagtcatcttagtctataaggatttagaagacatattgttaggggataatattgagtatgttagg-tgcacttatcttattatgagtatgcacaagtc |
33242874 |
T |
|
| Q |
323 |
tatataagcatt |
334 |
Q |
| |
|
|||||||||||| |
|
|
| T |
33242875 |
tatataagcatt |
33242886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 226 - 334
Target Start/End: Original strand, 7426516 - 7426624
Alignment:
| Q |
226 |
actcaccttagtctagaaggatctagaaggtatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtctat |
325 |
Q |
| |
|
||||| |||| ||||| |||||||||||| |||||||||||||||| |||||||||||||| ||||||||||| |||||| ||||| || |||||||| |
|
|
| T |
7426516 |
actcatcttaatctagtaggatctagaagttatcttgttaggggataatattgagtatgttatggtgcacttatcttattaagagtacacataagtctat |
7426615 |
T |
|
| Q |
326 |
ataagcatt |
334 |
Q |
| |
|
|||| |||| |
|
|
| T |
7426616 |
ataaacatt |
7426624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 239 - 334
Target Start/End: Original strand, 7422590 - 7422685
Alignment:
| Q |
239 |
tagaaggatctagaaggtatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtctatataagcatt |
334 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| | |||||||||||| ||||||||||| |||||| ||||| || ||||||||||||||||| |
|
|
| T |
7422590 |
tagaaggatctagaagttatcttgttaggggataacattgagtatgttatggtgcacttatcttattaagagtacacataagtctatataagcatt |
7422685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 293
Target Start/End: Original strand, 13886515 - 13886585
Alignment:
| Q |
223 |
atgactcaccttagtctagaaggatctagaaggtatcttgttaggggatgatattgagtatgttggggtgc |
293 |
Q |
| |
|
||||||||||||| ||||||| |||||| ||||||| |||||| ||| | ||||| |||||||| |||||| |
|
|
| T |
13886515 |
atgactcaccttaatctagaaagatctaaaaggtatattgttaaggggtaatattaagtatgttagggtgc |
13886585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 223 - 334
Target Start/End: Complemental strand, 18584109 - 18583998
Alignment:
| Q |
223 |
atgactcaccttagtctagaaggatctagaaggtatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtc |
322 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||| || ||||||||| |||||||||||||| ||||||| |||| |||||| |||||||||||||| |
|
|
| T |
18584109 |
atgactcaccttaatctagaaggatctaaaaggtatattattaggggataatattgagtatgttagggtgcagttatcgtattataagtatgcacaagtc |
18584010 |
T |
|
| Q |
323 |
tatataagcatt |
334 |
Q |
| |
|
|||||||||||| |
|
|
| T |
18584009 |
tatataagcatt |
18583998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 286
Target Start/End: Original strand, 13087634 - 13087696
Alignment:
| Q |
223 |
atgactcaccttagtctagaaggatctagaaggtatcttgttaggggatgatattgagtatgtt |
286 |
Q |
| |
|
||||||||||||| |||||| | ||||||||||||| |||||||||||| |||| ||||||||| |
|
|
| T |
13087634 |
atgactcaccttaatctagacg-atctagaaggtatattgttaggggataatatcgagtatgtt |
13087696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 223 - 330
Target Start/End: Original strand, 31211616 - 31211723
Alignment:
| Q |
223 |
atgactcaccttagtctagaaggatctagaaggtatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtc |
322 |
Q |
| |
|
||||||||| ||| ||||||||||| |||||| ||| |||||||||||| |||||||||||||| | |||||||||| ||| |||||||||||| ||||| |
|
|
| T |
31211616 |
atgactcactttaatctagaaggatttagaagatatattgttaggggataatattgagtatgttagagtgcacttatcttaatatgagtatgcataagtc |
31211715 |
T |
|
| Q |
323 |
tatataag |
330 |
Q |
| |
|
|||||||| |
|
|
| T |
31211716 |
tatataag |
31211723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 223 - 334
Target Start/End: Complemental strand, 20441141 - 20441031
Alignment:
| Q |
223 |
atgactcaccttagtctagaaggatctagaaggtatcttgttaggggatgatattgagtatgttggggtgcacttatgttattatgagtatgcacaagtc |
322 |
Q |
| |
|
||||||||||||| | |||||| ||||| || |||| |||||| ||||| |||||||| |||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
20441141 |
atgactcaccttaatttagaag-atctaaaaagtatattgttaagggataatattgagcatgtcagggtgcacttatcttattatgagtatgcacaagtc |
20441043 |
T |
|
| Q |
323 |
tatataagcatt |
334 |
Q |
| |
|
| || ||||||| |
|
|
| T |
20441042 |
tgtacaagcatt |
20441031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 219
Target Start/End: Original strand, 36050519 - 36050554
Alignment:
| Q |
184 |
tgataggatatttagaataatgagtactaatgtggt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
36050519 |
tgataggatatttagaataatgagtactaatgtggt |
36050554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 219
Target Start/End: Original strand, 36053778 - 36053813
Alignment:
| Q |
184 |
tgataggatatttagaataatgagtactaatgtggt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
36053778 |
tgataggatatttagaataatgagtactaatgtggt |
36053813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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