View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8949_low_48 (Length: 276)
Name: NF8949_low_48
Description: NF8949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8949_low_48 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 28404020 - 28403809
Alignment:
| Q |
18 |
atatatgtcatgcctgtgtgtgaacaatgattctgctttctcatgaacaagaaattgcaaagatgtttctgtaacaactgctcttacttctgcccattct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28404020 |
atatatgtcatgcctgtgtgtgaacaatgattctgctttctcatgaacaagaaattgcaaagatgtttctgtaacaactgctcttacttctgcccattct |
28403921 |
T |
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| Q |
118 |
gaaaaagcattaaaaacaagtccaaatttcatagcagctacacttccacaacaaccaagtagaattcgaggcttcctcggagcattaacatgtccaattt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28403920 |
gaaaaagcattaaaaacaagtccaaatttcatagcagctacacttccacaacaaccaagtagaattcgaggcttcctcggagcattaacatgtccaattg |
28403821 |
T |
|
| Q |
218 |
cactttttgagt |
229 |
Q |
| |
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|||||||||||| |
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| T |
28403820 |
cactttttgagt |
28403809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 28585776 - 28585987
Alignment:
| Q |
18 |
atatatgtcatgcctgtgtgtgaacaatgattctgctttctcatgaacaagaaattgcaaagatgtttctgtaacaactgctcttacttctgcccattct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28585776 |
atatatgtcatgcctgtgtgtgaacaatgattctgctttctcatgaacaagaaattgcaaagatgtttctgtaacaactgctcttacttctgcccattct |
28585875 |
T |
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| Q |
118 |
gaaaaagcattaaaaacaagtccaaatttcatagcagctacacttccacaacaaccaagtagaattcgaggcttcctcggagcattaacatgtccaattt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28585876 |
gaaaaagcattaaaaacaagtccaaatttcatagcagctacacttccacaacaaccaagtagaattcgaggcttcctcggagcattaacatgtccaattg |
28585975 |
T |
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| Q |
218 |
cactttttgagt |
229 |
Q |
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|||||||||||| |
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| T |
28585976 |
cactttttgagt |
28585987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 39 - 195
Target Start/End: Complemental strand, 28417556 - 28417400
Alignment:
| Q |
39 |
gaacaatgattctgctttctcatgaacaagaaattgcaaagatgtttctgtaacaactgctcttacttctgcccattctgaaaaagcattaaaaacaagt |
138 |
Q |
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||||| ||||||||||||||||| | |||||||||| |||| ||||| ||| ||||| ||| ||||||||||||||||||| |||||| || ||||||| |
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| T |
28417556 |
gaacattgattctgctttctcattagcaagaaattgtaaagctgtttttgtgacaacagcttttacttctgcccattctgataaagcacgaagaacaagt |
28417457 |
T |
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| Q |
139 |
ccaaatttcatagcagctacacttccacaacaaccaagtagaattcgaggcttcctc |
195 |
Q |
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||||||||||| |||||||||||||||||| |||||||| ||| |||||||||||| |
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| T |
28417456 |
ccaaatttcatggcagctacacttccacaagcaccaagtacaatccgaggcttcctc |
28417400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 195
Target Start/End: Complemental strand, 28419944 - 28419851
Alignment:
| Q |
102 |
tacttctgcccattctgaaaaagcattaaaaacaagtccaaatttcatagcagctacacttccacaacaaccaagtagaattcgaggcttcctc |
195 |
Q |
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||||||||||||||| ||||||| || ||| ||||| ||||||||||||||||||||||||||| ||||| | ||| |||||||||||| |
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| T |
28419944 |
tacttctgcccattccataaaagcacgaagaacgagtccgaatttcatagcagctacacttccacaagcaccaatcacaatccgaggcttcctc |
28419851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 195
Target Start/End: Original strand, 28582246 - 28582339
Alignment:
| Q |
102 |
tacttctgcccattctgaaaaagcattaaaaacaagtccaaatttcatagcagctacacttccacaacaaccaagtagaattcgaggcttcctc |
195 |
Q |
| |
|
||||||||||||||| ||||||| || ||| ||||| ||||||||||||||||||||||||||| ||||| | ||| |||||||||||| |
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| T |
28582246 |
tacttctgcccattccataaaagcacgaagaacgagtccgaatttcatagcagctacacttccacaagcaccaatcacaatccgaggcttcctc |
28582339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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