View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8949_low_5 (Length: 637)
Name: NF8949_low_5
Description: NF8949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8949_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Complemental strand, 38991180 - 38990706
Alignment:
| Q |
1 |
gctgagaggttctggtattgtctctgacatcaccattcacaactcgttatcccataccccaccactcactattgaaggacctgtccaaatgacgtctctc |
100 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38991180 |
gctgagaggttttggtattgtctctgacatcaccattcacagctcgttatctcataccccaccactcactattgaaggacctgtccaaatgacgtctctc |
38991081 |
T |
|
| Q |
101 |
tctggcacttatgtcaatcccaatgttgataatgttccttctgaagtcattgccaaccctgcatgttcttcttttagcattttcctctctggtagtcatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38991080 |
tctggcacttatgtcaatcccaatgttgataatgttccttctgaagtcattgccaaccctgcatgttcttcttttagcattttcctctctggtagtcatg |
38990981 |
T |
|
| Q |
201 |
gtcaagtgtatggtggaattgttgtagggaaggtcatgacttcaagtgttgttatgattagcgccactcttatgaagaaaaccaagttttatatggtggc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38990980 |
gtcaagtgtatggtggaattgttgtagggaaggtcatgacttcaagtgttgttatgattagcgccactcttatgaagaaaaccaagttttatatggtggc |
38990881 |
T |
|
| Q |
301 |
gtagtcctttatcctccccctcccgatgtgaatttggtgcaatggaaccacttcactcatact---------------tataatt-actggataaaatca |
384 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||| | | ||||||| |
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| T |
38990880 |
gtagtcctttatcctccccctccctatgtgaatgtggtgcaatggaaccacttcactcatacttcttaggagttttcctataattgtttaaaaaaaatca |
38990781 |
T |
|
| Q |
385 |
ttaatgtttgaataaaatggtgctgatatttctcattgttatacttcttaaataaaaatatgttattacaagttt |
459 |
Q |
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| T |
38990780 |
ttaatgtttaaataaaatgctcctgatatttctcgttgttatacttcttaaataaaaatatgttattacaagttt |
38990706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 3 - 309
Target Start/End: Original strand, 38954597 - 38954909
Alignment:
| Q |
3 |
tgagaggttctggtattgtctctgacatcaccattcacaactcgttatcccataccccaccactcactattgaaggacctgtccaaatgacgtctctctc |
102 |
Q |
| |
|
|||||||||| ||| |||||||| | || ||||| | |||||| ||| ||| |||| |||| |||||||||||||| || |||||| ||||||||| |
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| T |
38954597 |
tgagaggttccggtcttgtctctaatattaccatccgtaactcgacatctcattcccctgcactaactattgaaggacccatcaaaatgatgtctctctc |
38954696 |
T |
|
| Q |
103 |
tggcacttatgtcaatcccaatgttgataatgttccttctgaagtcattgccaaccctgcatgttcttcttttagcattttcctctctggta---gtcat |
199 |
Q |
| |
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||||||||| ||||||||||| ||||| ||||||||||||| |||| |||||||| ||||||||||||||||||||| ||||||| || || |
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| T |
38954697 |
tggcacttacatcaatcccaattctgatactgttccttctgaattcatcaccaaccctaaccattcttcttttagcattttcctatctggtaatggtaat |
38954796 |
T |
|
| Q |
200 |
---ggtcaagtgtatggtggaattgttgtagggaaggtcatgacttcaagtgttgttatgattagcgccactcttatgaagaaaaccaagttttatatgg |
296 |
Q |
| |
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||||| ||||||||||| |||||| |||| ||| | ||| |||| || ||||||||||| |||||||||| |||||| |||| ||||||| || |
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| T |
38954797 |
gagggtcaggtgtatggtgggattgttataggcaagataatggcttcgggtaatgttatgattaccgccactcttcagaagaagcccaaattttataggg |
38954896 |
T |
|
| Q |
297 |
tggcgtagtcctt |
309 |
Q |
| |
|
|| | |||||||| |
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|
| T |
38954897 |
tgacctagtcctt |
38954909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 579 - 618
Target Start/End: Complemental strand, 38990651 - 38990612
Alignment:
| Q |
579 |
tgaactgtgcttctctcaagatctcatgttcgattctctc |
618 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||| |
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|
| T |
38990651 |
tgaagtgtgtttctctcaagatctcatgttcgattctctc |
38990612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 591 - 625
Target Start/End: Complemental strand, 32206288 - 32206254
Alignment:
| Q |
591 |
ctctcaagatctcatgttcgattctctctgatgtc |
625 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |
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| T |
32206288 |
ctctcaagatctcatgttcgattccctctgatgtc |
32206254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 576 - 620
Target Start/End: Complemental strand, 19525563 - 19525519
Alignment:
| Q |
576 |
tcttgaactgtgcttctctcaagatctcatgttcgattctctctg |
620 |
Q |
| |
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||||||| |||| |||||||||||||||| ||||||||| ||||| |
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| T |
19525563 |
tcttgaagtgtgtttctctcaagatctcaggttcgattccctctg |
19525519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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