View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8949_low_50 (Length: 265)

Name: NF8949_low_50
Description: NF8949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8949_low_50
NF8949_low_50
[»] chr5 (5 HSPs)
chr5 (26-265)||(42561832-42562072)
chr5 (183-227)||(179418-179462)
chr5 (182-227)||(9120123-9120168)
chr5 (165-227)||(29688489-29688551)
chr5 (169-221)||(29696602-29696654)
[»] chr4 (36 HSPs)
chr4 (26-264)||(49040654-49040890)
chr4 (38-227)||(48147227-48147414)
chr4 (159-228)||(48864394-48864463)
chr4 (57-217)||(37826521-37826681)
chr4 (90-228)||(49038445-49038580)
chr4 (67-218)||(50669451-50669602)
chr4 (34-265)||(48863587-48863816)
chr4 (159-226)||(7790441-7790508)
chr4 (160-227)||(45371708-45371775)
chr4 (165-227)||(7878743-7878805)
chr4 (165-226)||(7908663-7908724)
chr4 (162-226)||(7786825-7786889)
chr4 (92-227)||(45365783-45365921)
chr4 (159-227)||(48156062-48156130)
chr4 (159-227)||(49043801-49043869)
chr4 (165-227)||(48853041-48853103)
chr4 (162-227)||(45384528-45384593)
chr4 (162-226)||(7766003-7766067)
chr4 (51-123)||(7766145-7766217)
chr4 (165-221)||(7771761-7771817)
chr4 (51-123)||(7786967-7787039)
chr4 (168-220)||(50666682-50666734)
chr4 (165-227)||(7773464-7773526)
chr4 (165-226)||(7813838-7813899)
chr4 (178-226)||(48903316-48903364)
chr4 (162-221)||(7237379-7237438)
chr4 (165-226)||(7800998-7801059)
chr4 (165-226)||(47208238-47208299)
chr4 (176-227)||(49048205-49048256)
chr4 (165-218)||(48870929-48870982)
chr4 (165-218)||(48876233-48876286)
chr4 (165-218)||(48886615-48886668)
chr4 (176-216)||(48734174-48734214)
chr4 (178-226)||(48861649-48861697)
chr4 (159-227)||(48899100-48899168)
chr4 (177-221)||(50672864-50672908)
[»] chr3 (4 HSPs)
chr3 (52-227)||(47451423-47451601)
chr3 (169-226)||(11024146-11024203)
chr3 (177-226)||(11005579-11005628)
chr3 (183-227)||(11015148-11015192)
[»] chr1 (7 HSPs)
chr1 (168-265)||(24310535-24310635)
chr1 (49-265)||(24367487-24367700)
chr1 (166-265)||(24416097-24416199)
chr1 (153-227)||(24340771-24340845)
chr1 (153-227)||(24353136-24353210)
chr1 (165-218)||(24323139-24323192)
chr1 (165-227)||(24369801-24369863)
[»] chr8 (8 HSPs)
chr8 (151-226)||(15349244-15349319)
chr8 (98-227)||(12195684-12195813)
chr8 (98-227)||(12440112-12440241)
chr8 (67-226)||(12200703-12200862)
chr8 (67-226)||(12445131-12445290)
chr8 (177-227)||(4031577-4031627)
chr8 (52-123)||(4030311-4030382)
chr8 (190-227)||(4962183-4962220)
[»] chr7 (3 HSPs)
chr7 (164-233)||(48884178-48884247)
chr7 (180-221)||(30130916-30130957)
chr7 (170-221)||(30165863-30165914)
[»] chr6 (3 HSPs)
chr6 (162-221)||(21979264-21979323)
chr6 (159-220)||(14197316-14197377)
chr6 (171-227)||(21016181-21016237)
[»] chr2 (1 HSPs)
chr2 (52-114)||(29350898-29350960)


Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 26 - 265
Target Start/End: Original strand, 42561832 - 42562072
Alignment:
Q  26 tcttcacaataggagttatgct-tagaaactctcctttgtcgttatatttcaccaatccggtaccaccatcttttccaataatatcaccattttttgtat 124  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  42561832 tcttcacaataggagttatgctctagaaactcccctttgtcgttatatttcaccaatccggtaccaccatctgttccaataatatcaccattttttgtat 42561931  T
Q  125 aggataaagggcaaaagtagggaatgtcatcataaataggaagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatc 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42561932 aggataaagggcaaaagtagggaatgtcatcataaataggaagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatc 42562031  T
Q  225 aacgttatcgtccctcaaaatccatagactgagaaatcctc 265  Q
    ||| |||||||||||||||||||||||||||||||||||||    
T  42562032 aacattatcgtccctcaaaatccatagactgagaaatcctc 42562072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 179462 - 179418
Alignment:
Q  183 ccaagatgaatgcactttgtattctttcatcacccatatatcaac 227  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  179462 ccaagatgaatgcactttgtattctttcatcacccatatttcaac 179418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 9120168 - 9120123
Alignment:
Q  182 tccaagatgaatgcactttgtattctttcatcacccatatatcaac 227  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||    
T  9120168 tccaagaggaatgcactttgtattctttcatcacccatatttcaac 9120123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 29688551 - 29688489
Alignment:
Q  165 aagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaac 227  Q
    |||||| ||| |||| |||||||| || ||||| ||||||| ||||||||||||||| |||||    
T  29688551 aagaacgagagtctttgtccaagacgattgcacattgtattttttcatcacccatatttcaac 29688489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 29696654 - 29696602
Alignment:
Q  169 acaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatat 221  Q
    |||||| ||||||||||||| || ||||| ||||||| || ||||||||||||    
T  29696654 acaagagtcttagtccaagaggattgcacattgtatttttccatcacccatat 29696602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 26 - 264
Target Start/End: Original strand, 49040654 - 49040890
Alignment:
Q  26 tcttcacaataggagttatgct-tagaaactctcctttgtcgttatatttcaccaatccggtaccaccatcttttccaataatatcaccattttttgtat 124  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||  |||  |||| |  | ||| |||||  ||| ||||||||     
T  49040654 tcttcacaataggagttatgctctagaaactctcctttgtcattatatttcaccagtccaatacagccatttgatgcaacaatattgccactttttgtac 49040753  T
Q  125 aggataaagggcaaaagtagggaatgtcatcataaataggaagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatc 224  Q
    || ||| |||| ||| ||| |||||| |||||   |||||||| |||||||| ||| |||||||||||||||||   ||||||| |||||||||||||||    
T  49040754 agcatataggggaaaggtatggaatggcatca---ataggaagcacaagaattttaatccaagatgaatgcactccatattcttccatcacccatatatc 49040850  T
Q  225 aacgttatcgtccctcaaaatccatagactgagaaatcct 264  Q
    |||  |||  |||| | ||| |||||||||||||||||||    
T  49040851 aaccgtatgatcccccgaaacccatagactgagaaatcct 49040890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 38 - 227
Target Start/End: Original strand, 48147227 - 48147414
Alignment:
Q  38 gagttatgct-tagaaactctcctttgtcgttatatttcaccaatccggtaccaccatcttttccaataatatcaccattttttgtataggataaagggc 136  Q
    |||||||||| ||||| || ||||||||||||||| |||| |||| | ||  |||||| | |||||||||| |||||| |||||||  || ||| ||||     
T  48147227 gagttatgctctagaagctgtcctttgtcgttatacttcaacaattcagtttcaccatttgttccaataatgtcaccactttttgtggagcatatagggg 48147326  T
Q  137 aaaagtagggaatgtcatcataaataggaagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaac 227  Q
    |||||||||||||| |||||   ||||  | |  |||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  48147327 aaaagtagggaatgccatca---atagacaaattaagagtcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaac 48147414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 159 - 228
Target Start/End: Complemental strand, 48864463 - 48864394
Alignment:
Q  159 aataggaagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaacg 228  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  48864463 aataggaagaacaagaatcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaacg 48864394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 57 - 217
Target Start/End: Original strand, 37826521 - 37826681
Alignment:
Q  57 tcctttgtcgttatatttcaccaatccggtaccaccatcttttccaataatatcaccattttttgtataggataaagggcaaaagtagggaatgtcatca 156  Q
    |||||| || ||||| |||||||||||   |||||| |||  |||||||||||||||| |||||||| |  ||| |||| |||| | ||||||| |||||    
T  37826521 tcctttatcattatacttcaccaatccaagaccaccgtctgatccaataatatcaccactttttgtagaacatagagggtaaaaattgggaatggcatca 37826620  T
Q  157 taaataggaagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcaccc 217  Q
    | |||  ||| ||||||| ||||||||||||| ||||||| ||||||||||||||||||||    
T  37826621 tcaatccgaacaacaagagtcttagtccaagacgaatgcagtttgtattctttcatcaccc 37826681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 90 - 228
Target Start/End: Original strand, 49038445 - 49038580
Alignment:
Q  90 accatcttttccaataatatcaccattttttgtataggataaagggcaaaagtagggaatgtcatcataaataggaagaacaagaatcttagtccaagat 189  Q
    ||||||| |||||||||||| |||| |||||||| |  ||| |||| |||||||||||||| ||  |   ||||  ||||||||| |||||||||||||     
T  49038445 accatctgttccaataatatgaccactttttgtacaacatataggggaaaagtagggaatgccacta---atagacagaacaagagtcttagtccaagac 49038541  T
Q  190 gaatgcactttgtattctttcatcacccatatatcaacg 228  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  49038542 gaatgaactttgtattctttcatcacccatatttcaacg 49038580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 67 - 218
Target Start/End: Complemental strand, 50669602 - 50669451
Alignment:
Q  67 ttatatttcaccaatccggtaccaccatcttttccaataatatcaccattttttgtataggataaagggcaaaagtagggaatgtcatcataaataggaa 166  Q
    ||||||||||||||||| | |||||||||| |||||||||| |||||||| |||||| || ||| |||| |||| |  |||||| |  ||| |||  | |    
T  50669602 ttatatttcaccaatccagaaccaccatctgttccaataatgtcaccattctttgtagagcatataggggaaaatttaggaatgactgcatcaatctgta 50669503  T
Q  167 gaacaagaatcttagtccaagatgaatgcactttgtattctttcatcaccca 218  Q
    ||| |||| |||||||||||||||||||||  ||| | ||||||||||||||    
T  50669502 gaataagagtcttagtccaagatgaatgcaacttggaatctttcatcaccca 50669451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 265
Target Start/End: Complemental strand, 48863816 - 48863587
Alignment:
Q  34 ataggagttatgct-tagaaactctcctttgtcgttatatttcaccaatccggtaccaccatcttttccaataatatcaccattttttgtataggataaa 132  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||| |||  | |  |||| |  | ||| |||||  ||| |||||||| |  |||      
T  48863816 ataggagttatgctctagaaactctcctttgtcattatatttcaccagtccaatccagccatttgatgcaacaatattgccactttttgtacaacatatg 48863717  T
Q  133 gggcaaaagtagggaatgtcatcataaataggaagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaacgttat 232  Q
    ||| ||| |||||||| | |||||   |||| ||| |||||| | ||| |||||||||||||||||  |||||||| |||||||||||| ||||| ||||    
T  48863716 gggtaaaggtagggaaaggcatca---atagaaagcacaagagttttaatccaagatgaatgcactccgtattcttccatcacccatatgtcaaccttat 48863620  T
Q  233 cgtccctcaaaatccatagactgagaaatcctc 265  Q
      |||| | ||| ||||||||||||| ||||||    
T  48863619 gatcccccgaaacccatagactgagagatcctc 48863587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 159 - 226
Target Start/End: Complemental strand, 7790508 - 7790441
Alignment:
Q  159 aataggaagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaa 226  Q
    ||||| |||||||||| | ||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  7790508 aatagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaa 7790441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 45371708 - 45371775
Alignment:
Q  160 ataggaagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaac 227  Q
    ||||||||||||| | ||||||||||||| ||||||||||||||||||||||| |||||||| |||||    
T  45371708 ataggaagaacaaaagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaac 45371775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 7878805 - 7878743
Alignment:
Q  165 aagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaac 227  Q
    |||||||||| | ||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  7878805 aagaacaagagttttaatccaagatgaatgcactttgtattctttcatcacccatatttcaac 7878743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 7908724 - 7908663
Alignment:
Q  165 aagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaa 226  Q
    |||||||||| | ||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  7908724 aagaacaagagttttattccaagatgaatgcactttgtattctttcatcacccatatttcaa 7908663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 7786889 - 7786825
Alignment:
Q  162 aggaagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaa 226  Q
    ||||||||||||| ||||| |||||||| ||||||| ||||||||||||||||||||||| ||||    
T  7786889 aggaagaacaagagtcttattccaagataaatgcacgttgtattctttcatcacccatatttcaa 7786825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 92 - 227
Target Start/End: Original strand, 45365783 - 45365921
Alignment:
Q  92 catcttttccaataatatcaccattttttgtataggataaagggcaaaagta------gggaatgtcatcataaataggaagaacaagaatcttagtcca 185  Q
    ||||| ||||||||||||||||  |||||||| || |||||||| |||||||      ||||||| |||||   |||||||||||  || |||| |||||    
T  45365783 catctgttccaataatatcaccgctttttgtagagcataaaggggaaaagtattgagtgggaatgccatca---ataggaagaacgtgagtctttgtcca 45365879  T
Q  186 agatgaatgcactttgtattctttcatcacccatatatcaac 227  Q
    ||| ||| ||||||| |||||||||||||||||||| |||||    
T  45365880 agacgaacgcactttatattctttcatcacccatatttcaac 45365921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 48156062 - 48156130
Alignment:
Q  159 aataggaagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaac 227  Q
    ||||||||| |||||| | ||||||||||| ||||||||||||||||| |||||||||||||| |||||    
T  48156062 aataggaaggacaagagttttagtccaagaagaatgcactttgtattcgttcatcacccatatttcaac 48156130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 49043801 - 49043869
Alignment:
Q  159 aataggaagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaac 227  Q
    ||||| || ||||||| |||||||||| || |||||||||||||||||||||||||||||||| |||||    
T  49043801 aatagaaaaaacaagagtcttagtccatgacgaatgcactttgtattctttcatcacccatatttcaac 49043869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 48853103 - 48853041
Alignment:
Q  165 aagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaac 227  Q
    |||||||||| ||||||||||||| ||| ||||||||||||||||||| |||||||| |||||    
T  48853103 aagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaac 48853041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 45384528 - 45384593
Alignment:
Q  162 aggaagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaac 227  Q
    |||||||||| || |||| |||||||| ||||||||||| |||||||||||||||||||| |||||    
T  45384528 aggaagaacacgagtctttgtccaagacgaatgcactttatattctttcatcacccatatttcaac 45384593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 7766067 - 7766003
Alignment:
Q  162 aggaagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaa 226  Q
    ||||||||||||  |||||||||| || |||| ||||||||||||||||||||||||||| ||||    
T  7766067 aggaagaacaagtgtcttagtccatgacgaatacactttgtattctttcatcacccatatttcaa 7766003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 123
Target Start/End: Complemental strand, 7766217 - 7766145
Alignment:
Q  51 aaactctcctttgtcgttatatttcaccaatccggtaccaccatcttttccaataatatcaccattttttgta 123  Q
    ||||| ||||||||| ||||| |||||||||   |||||||||| ||||||||||||||||||||||| ||||    
T  7766217 aaactgtcctttgtcattatacttcaccaatttagtaccaccatattttccaataatatcaccattttctgta 7766145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 7771817 - 7771761
Alignment:
Q  165 aagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatat 221  Q
    |||||||||| | |||||||| || ||||||||||||||||||||||||||||||||    
T  7771817 aagaacaagagttttagtccatgacgaatgcactttgtattctttcatcacccatat 7771761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 123
Target Start/End: Complemental strand, 7787039 - 7786967
Alignment:
Q  51 aaactctcctttgtcgttatatttcaccaatccggtaccaccatcttttccaataatatcaccattttttgta 123  Q
    ||||| ||||||||| ||||| |||||||||   |||||||||| ||||||||||||||||||||||| ||||    
T  7787039 aaactgtcctttgtcattatacttcaccaatttagtaccaccatattttccaataatatcaccattttctgta 7786967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 50666734 - 50666682
Alignment:
Q  168 aacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccata 220  Q
    ||||||| | ||||||||||||||||||||||||||||||| |||||||||||    
T  50666734 aacaagagttttagtccaagatgaatgcactttgtattcttacatcacccata 50666682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 7773464 - 7773526
Alignment:
Q  165 aagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaac 227  Q
    ||||||||||   ||| ||||||| |||||||||||||||||||||||||||||||| |||||    
T  7773464 aagaacaagagatttaatccaagacgaatgcactttgtattctttcatcacccatatttcaac 7773526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 7813899 - 7813838
Alignment:
Q  165 aagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaa 226  Q
    |||||||||| | ||| ||||||| |||||||||||||||||||||| ||||||||| ||||    
T  7813899 aagaacaagagttttattccaagacgaatgcactttgtattctttcaacacccatatttcaa 7813838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 48903364 - 48903316
Alignment:
Q  178 ttagtccaagatgaatgcactttgtattctttcatcacccatatatcaa 226  Q
    |||||||||||  ||||||||||||||||||||||||||||||| ||||    
T  48903364 ttagtccaagacaaatgcactttgtattctttcatcacccatatttcaa 48903316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 7237379 - 7237438
Alignment:
Q  162 aggaagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatat 221  Q
    |||||| |||||| | ||||||||| | ||||||| ||||||||||||||||||||||||    
T  7237379 aggaagcacaagagttttagtccaaaacgaatgcattttgtattctttcatcacccatat 7237438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 7801059 - 7800998
Alignment:
Q  165 aagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaa 226  Q
    |||||||||| | ||| ||||||| |||||||||||||| ||||||| ||||||||| ||||    
T  7801059 aagaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttcaa 7800998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 47208299 - 47208238
Alignment:
Q  165 aagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaa 226  Q
    ||||| |||||  |||||||||||||| || |||||||||||||||||||||| ||| ||||    
T  47208299 aagaataagaactttagtccaagatgattgtactttgtattctttcatcacccttatttcaa 47208238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 49048205 - 49048256
Alignment:
Q  176 tcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaac 227  Q
    |||||||||| || ||||||||||| || ||||||||||||||||| |||||    
T  49048205 tcttagtccatgacgaatgcactttatactctttcatcacccatatttcaac 49048256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 48870982 - 48870929
Alignment:
Q  165 aagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcaccca 218  Q
    |||||||||| |||| |||||||| || | |||||||||||| |||||||||||    
T  48870982 aagaacaagagtctttgtccaagacgagttcactttgtattcattcatcaccca 48870929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 48876286 - 48876233
Alignment:
Q  165 aagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcaccca 218  Q
    |||||||||| |||| |||||||| || | |||||||||||| |||||||||||    
T  48876286 aagaacaagagtctttgtccaagacgagttcactttgtattcattcatcaccca 48876233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 48886668 - 48886615
Alignment:
Q  165 aagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcaccca 218  Q
    |||||||||| |||| |||||||| || | |||||||||||| |||||||||||    
T  48886668 aagaacaagagtctttgtccaagacgagttcactttgtattcattcatcaccca 48886615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 48734214 - 48734174
Alignment:
Q  176 tcttagtccaagatgaatgcactttgtattctttcatcacc 216  Q
    |||| |||||| | |||||||||||||||||||||||||||    
T  48734214 tctttgtccaatacgaatgcactttgtattctttcatcacc 48734174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 48861697 - 48861649
Alignment:
Q  178 ttagtccaagatgaatgcactttgtattctttcatcacccatatatcaa 226  Q
    |||||||||||  ||||||||||||||||||| || |||||||| ||||    
T  48861697 ttagtccaagacaaatgcactttgtattcttttattacccatatttcaa 48861649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 48899168 - 48899100
Alignment:
Q  159 aataggaagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaac 227  Q
    |||||||||||||||| ||   |||||||| || |  ||||| |||||||||||||||||||| |||||    
T  48899168 aataggaagaacaagagtcactgtccaagaggattttactttatattctttcatcacccatatttcaac 48899100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 50672908 - 50672864
Alignment:
Q  177 cttagtccaagatgaatgcactttgtattctttcatcacccatat 221  Q
    ||||||||| || ||||||| |||||||| |||||||||||||||    
T  50672908 cttagtccacgacgaatgcaatttgtattgtttcatcacccatat 50672864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 52 - 227
Target Start/End: Original strand, 47451423 - 47451601
Alignment:
Q  52 aactctcctttgtcgttatatttcaccaatccggtaccaccatcttttccaataatatcaccattttttgtataggataaagggcaaaagt------agg 145  Q
    |||| ||||||||| ||||| || |||||||||||| || ||||| ||||||||||||||||| |||||||| ||| ||| ||| ||||||      |||    
T  47451423 aactgtcctttgtcattatacttaaccaatccggtatcatcatctgttccaataatatcaccactttttgtagaggttaaggggtaaaagtactgagagg 47451522  T
Q  146 gaatgtcatcataaataggaagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaac 227  Q
    ||||| ||||   |||||||||||||||| ||||   |||||| ||||  |||||||||||||||||||||||||| |||||    
T  47451523 gaatgccatc---aataggaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaac 47451601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 11024146 - 11024203
Alignment:
Q  169 acaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaa 226  Q
    |||||| ||||||||||||| ||||||||||||||||||||||| |||||||| ||||    
T  11024146 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 11024203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 11005579 - 11005628
Alignment:
Q  177 cttagtccaagatgaatgcactttgtattctttcatcacccatatatcaa 226  Q
    |||||||||||| ||||||||||||||||||||||| |||||||| ||||    
T  11005579 cttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 11005628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 11015148 - 11015192
Alignment:
Q  183 ccaagatgaatgcactttgtattctttcatcacccatatatcaac 227  Q
    |||||| ||||||||||||||||||||||| |||||||| |||||    
T  11015148 ccaagacgaatgcactttgtattctttcataacccatatttcaac 11015192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 168 - 265
Target Start/End: Complemental strand, 24310635 - 24310535
Alignment:
Q  168 aacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaacgtta---tcgtccctcaaaatccatagactgagaaatcct 264  Q
    ||||||| | ||| ||||||| || ||||||||||||||||||||||||||||||||||| |||   |||||||||| || |||||||||||||||||||    
T  24310635 aacaagagttttactccaagaagactgcactttgtattctttcatcacccatatatcaactttatcctcgtccctcataacccatagactgagaaatcct 24310536  T
Q  265 c 265  Q
    |    
T  24310535 c 24310535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 265
Target Start/End: Complemental strand, 24367700 - 24367487
Alignment:
Q  49 agaaactctcctttgtcgttatatttcaccaatccggtaccaccatcttttccaataatatcaccattttttgtataggataaagggcaaaagtagggaa 148  Q
    ||||||||||||| ||||| |||||| | |||||| |||| || || | ||||||||||||||||| |||||||| |  ||| |||| ||| |   ||||    
T  24367700 agaaactctccttcgtcgtcatattttatcaatccagtacgactatttgttccaataatatcaccagtttttgtacaacatatagggaaaatgcgaggaa 24367601  T
Q  149 tgtcatcataaataggaagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaacgttatcgtccctcaaaatcca 248  Q
    ||  |||    ||||  ||||||||| | ||||||||||| ||||||||||||||||||| ||| |||||||||| ||   ||||   |||||||| |||    
T  24367600 tggtatcc---atagttagaacaagagttttagtccaagacgaatgcactttgtattcttccattacccatatataaagtgtatctctcctcaaaaccca 24367504  T
Q  249 tagactgagaaatcctc 265  Q
    |||||||||||||||||    
T  24367503 tagactgagaaatcctc 24367487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 265
Target Start/End: Complemental strand, 24416199 - 24416097
Alignment:
Q  166 agaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaacgttatcgt---ccctcaaaatccatagactgagaaatc 262  Q
    ||||||||| | |||||||||||||| ||| |||||||||||||||||||||||||||||||  |||| |    |||||||| |||||||||||||||||    
T  24416199 agaacaagagttttagtccaagatgactgccctttgtattctttcatcacccatatatcaactctatccttaaacctcaaaacccatagactgagaaatc 24416100  T
Q  263 ctc 265  Q
    |||    
T  24416099 ctc 24416097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 24340845 - 24340771
Alignment:
Q  153 atcataaataggaagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaac 227  Q
    ||||||| ||| |||||||||| | |||||||||||||| |||||||| ||||||||||| ||||| ||||||||    
T  24340845 atcataagtagtaagaacaagagttttagtccaagatgactgcactttatattctttcattacccagatatcaac 24340771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 24353210 - 24353136
Alignment:
Q  153 atcataaataggaagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaac 227  Q
    ||||||| ||| |||||||||| | |||||||||||||| |||||||| ||||||||||| ||||| ||||||||    
T  24353210 atcataagtagtaagaacaagagttttagtccaagatgactgcactttatattctttcattacccagatatcaac 24353136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 24323192 - 24323139
Alignment:
Q  165 aagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcaccca 218  Q
    |||||||||| | |||||| ||||||| ||||||||||||||||||||||||||    
T  24323192 aagaacaagagttttagtcgaagatgactgcactttgtattctttcatcaccca 24323139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 24369863 - 24369801
Alignment:
Q  165 aagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaac 227  Q
    |||||||||| | |||||||||||||||||||||   || | || ||||||||||||||||||    
T  24369863 aagaacaagagttttagtccaagatgaatgcactccatactattccatcacccatatatcaac 24369801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 151 - 226
Target Start/End: Complemental strand, 15349319 - 15349244
Alignment:
Q  151 tcatcataaataggaagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaa 226  Q
    ||||||| ||||  ||||||||||||||| |||||||| || | ||||||||||||||||||||||||||| ||||    
T  15349319 tcatcatcaatattaagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 15349244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 98 - 227
Target Start/End: Complemental strand, 12195813 - 12195684
Alignment:
Q  98 ttccaataatatcaccattttttgtataggataaagggcaaaagtagggaatgtcatcataaataggaagaacaagaatcttagtccaagatgaatgcac 197  Q
    ||||||||||||||||| |||||||| || |||  ||| ||||  | || |||||||  | ||||||||  |||||| |||||||||||||||| ||       
T  12195813 ttccaataatatcaccactttttgtagagtatacgggggaaaaccaaggtatgtcattgtcaataggaattacaagagtcttagtccaagatgattgttg 12195714  T
Q  198 tttgtattctttcatcacccatatatcaac 227  Q
    |||||||||||||||| ||||||| |||||    
T  12195713 tttgtattctttcatctcccatatttcaac 12195684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 98 - 227
Target Start/End: Complemental strand, 12440241 - 12440112
Alignment:
Q  98 ttccaataatatcaccattttttgtataggataaagggcaaaagtagggaatgtcatcataaataggaagaacaagaatcttagtccaagatgaatgcac 197  Q
    ||||||||||||||||| |||||||| || |||  ||| ||||  | || |||||||  | ||||||||  |||||| |||||||||||||||| ||       
T  12440241 ttccaataatatcaccactttttgtagagtatacgggggaaaaccaaggtatgtcattgtcaataggaattacaagagtcttagtccaagatgattgttg 12440142  T
Q  198 tttgtattctttcatcacccatatatcaac 227  Q
    |||||||||||||||| ||||||| |||||    
T  12440141 tttgtattctttcatctcccatatttcaac 12440112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 226
Target Start/End: Complemental strand, 12200862 - 12200703
Alignment:
Q  67 ttatatttcaccaatccggtaccaccatcttttccaataatatcaccattttttgtataggataaagggcaaaagtagggaatgtcatcataaataggaa 166  Q
    ||||| |||||||||||   ||||| |||  ||||||||||||||||| |||||||| || ||| |||| ||||| |  | |||||||    ||||||||    
T  12200862 ttatacttcaccaatccatgaccactatcagttccaataatatcaccactttttgtagagtatataggggaaaagcaatgcatgtcattgccaataggaa 12200763  T
Q  167 gaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaa 226  Q
      |||||| |||| |||||||| ||| ||| |||||||  ||||||| ||||||| ||||    
T  12200762 ttacaagagtcttggtccaagacgaacgcagtttgtatattttcatcgcccatatttcaa 12200703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 226
Target Start/End: Complemental strand, 12445290 - 12445131
Alignment:
Q  67 ttatatttcaccaatccggtaccaccatcttttccaataatatcaccattttttgtataggataaagggcaaaagtagggaatgtcatcataaataggaa 166  Q
    ||||| |||||||||||   ||||| |||  ||||||||||||||||| |||||||| || ||| |||| ||||| |  | |||||||    ||||||||    
T  12445290 ttatacttcaccaatccatgaccactatcagttccaataatatcaccactttttgtagagtatataggggaaaagcaatgcatgtcattgccaataggaa 12445191  T
Q  167 gaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaa 226  Q
      |||||| |||| |||||||| ||| ||| |||||||  ||||||| ||||||| ||||    
T  12445190 ttacaagagtcttggtccaagacgaacgcagtttgtatattttcatcgcccatatttcaa 12445131  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 4031577 - 4031627
Alignment:
Q  177 cttagtccaagatgaatgcactttgtattctttcatcacccatatatcaac 227  Q
    |||||||||||| ||||||| ||||||||||||||| |||||||| |||||    
T  4031577 cttagtccaagacgaatgcattttgtattctttcataacccatatttcaac 4031627  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 123
Target Start/End: Original strand, 4030311 - 4030382
Alignment:
Q  52 aactctcctttgtcgttatatttcaccaatccggtaccaccatcttttccaataatatcaccattttttgta 123  Q
    |||| ||||||||| | ||| ||||||||| | |||||||||| | ||||||||||||||||| || |||||    
T  4030311 aactgtcctttgtcatcatacttcaccaattcagtaccaccatatgttccaataatatcaccacttattgta 4030382  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 4962183 - 4962220
Alignment:
Q  190 gaatgcactttgtattctttcatcacccatatatcaac 227  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  4962183 gaatgcagtttgtattctttcatcacccatatttcaac 4962220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 164 - 233
Target Start/End: Complemental strand, 48884247 - 48884178
Alignment:
Q  164 gaagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaacgttatc 233  Q
    ||||||||||| |||||||||||||   ||||||||||||||||||||||||| |||| ||||| |||||    
T  48884247 gaagaacaagagtcttagtccaagacatatgcactttgtattctttcatcacctatatttcaactttatc 48884178  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 30130916 - 30130957
Alignment:
Q  180 agtccaagatgaatgcactttgtattctttcatcacccatat 221  Q
    ||||||||||||||||||| ||||||||| ||||||||||||    
T  30130916 agtccaagatgaatgcactgtgtattcttgcatcacccatat 30130957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 30165914 - 30165863
Alignment:
Q  170 caagaatcttagtccaagatgaatgcactttgtattctttcatcacccatat 221  Q
    ||||| || ||||||||||||||||||||  |||||||| ||||||||||||    
T  30165914 caagagtcgtagtccaagatgaatgcactgcgtattcttgcatcacccatat 30165863  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 21979264 - 21979323
Alignment:
Q  162 aggaagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatat 221  Q
    ||||||||||||  ||||| ||||||| ||| ||||||||||||||||||||||||||||    
T  21979264 aggaagaacaagtttcttattccaagaggaacgcactttgtattctttcatcacccatat 21979323  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 14197316 - 14197377
Alignment:
Q  159 aataggaagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccata 220  Q
    |||||||||||||| |  |  ||||||||||||||||| |||||||||||||||||||||||    
T  14197316 aataggaagaacaaaatgcacagtccaagatgaatgcattttgtattctttcatcacccata 14197377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 21016237 - 21016181
Alignment:
Q  171 aagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaac 227  Q
    |||| ||||||||||||| ||||| ||||||||||||||||| |||||||| |||||    
T  21016237 aagagtcttagtccaagacgaatgtactttgtattctttcataacccatatttcaac 21016181  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 114
Target Start/End: Complemental strand, 29350960 - 29350898
Alignment:
Q  52 aactctcctttgtcgttatatttcaccaatccggtaccaccatcttttccaataatatcacca 114  Q
    |||| ||||||||| | ||| ||||||||| | |||||||||||  |||||||||||||||||    
T  29350960 aactgtcctttgtcataatacttcaccaattcagtaccaccatccgttccaataatatcacca 29350898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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