View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8949_low_52 (Length: 253)
Name: NF8949_low_52
Description: NF8949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8949_low_52 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 9 - 235
Target Start/End: Original strand, 48535840 - 48536067
Alignment:
| Q |
9 |
agtgtgtagatctccatgtattagtgcctgagccctctcacagaacctgaatgaacataaattttcatcaacaaaaacccaaacaacaaaactactgcat |
108 |
Q |
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| T |
48535840 |
agtgtgtagatctccatgtattagtgcctgagccctctcacagaacctgaatgaacataaattttcatcaacaaaaacccaaacaacaaaactactgcat |
48535939 |
T |
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| Q |
109 |
taaaagaag-aagaaagtgagagtgtgagacatatataatactttgattttagctcagcaacttcaagcttcagtagattgtcttcccgaacagcctcag |
207 |
Q |
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||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
48535940 |
taaaagaagaaaaaaagtgagagtgtgagacatatataatactttgattttagctcagcaacttcaagctttagtagattgtcttcccgaacagcctcag |
48536039 |
T |
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| Q |
208 |
catcacggtcaagattaggtgaagtcca |
235 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
48536040 |
catcacggtcaagattaggtgaagtcca |
48536067 |
T |
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