View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8949_low_9 (Length: 510)
Name: NF8949_low_9
Description: NF8949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8949_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 91 - 491
Target Start/End: Original strand, 51530573 - 51530973
Alignment:
| Q |
91 |
tactgaaactaatacgttcacacatataataatttgtaaataaactaaatgtgctataaaatcttctgtacagggaagaataacagtactggaaatctaa |
190 |
Q |
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| T |
51530573 |
tactaaaactaatacgttgacacatataataatttgtaaataaactaaatgtgctataaaatcctctgtacagggaagaataacagtactggaaatctaa |
51530672 |
T |
|
| Q |
191 |
gctctgatctaagaacatggctgagtgctgttcttgtgaatacagacacttgtttagaaggattacaaggattacaaagtacatttgcaaagagtgatgt |
290 |
Q |
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| T |
51530673 |
gctctgatctaagaacatggctcagtgctgttcttgtgaatacagacacttgtttagaaggattacaaggattacaaagtacatttgcaaagagtgatgt |
51530772 |
T |
|
| Q |
291 |
atcaagcggtcttgatcgtgtaatgtcattggtgaagaagaatctttttgaagtagtcctcagcaacgatcaacttgcaactgctacctccgaagataga |
390 |
Q |
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| T |
51530773 |
atcaagcggtcttgatcgtgtattgtcattggtgaagaagaatctttttgaagtagtcctcagcaacgatcaacttgcaactgctacctccgaagataga |
51530872 |
T |
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| Q |
391 |
tttccttcgtggattaactacggagacaggaagttttttgaggcaaatgaaacgactgctgatgctattgtggcggctgatgggagtgggaactacacta |
490 |
Q |
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| T |
51530873 |
tttccttcgtggattaacgacggagacaagaagttttttgaggcaaatgaaacgactgctgatgctattgtggcggctgatgggagtgggaactacacta |
51530972 |
T |
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| Q |
491 |
c |
491 |
Q |
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| T |
51530973 |
c |
51530973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 160 - 260
Target Start/End: Original strand, 51524458 - 51524558
Alignment:
| Q |
160 |
acagggaagaataacagtactggaaatctaagctctgatctaagaacatggctgagtgctgttcttgtgaatacagacacttgtttagaaggattacaag |
259 |
Q |
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|||| |||| ||||||| || ||||| |||| || ||||||||| |||||||||||||||||||||||| || ||||||| ||| ||||||||||| ||| |
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| T |
51524458 |
acagagaaggataacagcacaggaaaactaaactgtgatctaaggacatggctgagtgctgttcttgtgtatccagacacatgtatagaaggattagaag |
51524557 |
T |
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| Q |
260 |
g |
260 |
Q |
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| T |
51524558 |
g |
51524558 |
T |
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