View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8950_high_1 (Length: 936)
Name: NF8950_high_1
Description: NF8950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8950_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 829; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 829; E-Value: 0
Query Start/End: Original strand, 19 - 922
Target Start/End: Original strand, 2489746 - 2490644
Alignment:
| Q |
19 |
catgtctaccatcacttctaaatggtttggtgaagacgagaagaatgtccgagctttattcacactggcagccaaggtctccccaactattatatttgtc |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2489746 |
catgtctaccatcacttctaaatggtttggtgaagacgagaagaatgtccgagctttattcacactggcagccaaggtctccccaactattatatttgtc |
2489845 |
T |
|
| Q |
119 |
gatgaggttgacagtatgcttgggcagcgaacaagagttggggaacatgaagccatgcggaaaataaagaatgaattcatgtccaattgggatggactta |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2489846 |
gatgaggttgacagtatgcttgggcagcgaacaagagttggggaacatgaagccatgcggaaaataaagaatgaattcatgtccaattgggatggactta |
2489945 |
T |
|
| Q |
219 |
cctcgaaatcagaggatcgtattcttgtcctcgctgcaaccaataggccctttgacttggatgaagcaattattagacgatttgaaagaaggtacctcta |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2489946 |
cctcgaaatcagaggatcgtattcttgtcctcgctgcaaccaataggccctttgacttggatgaagcaattattagacgatttgaaagaaggtacctcta |
2490045 |
T |
|
| Q |
319 |
ctagttctacatgtacaatgaattttttgtgctctttcttagtacctgaagagtgctagcaatacactttgtaccatacttttcaacacaatctttgcta |
418 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2490046 |
ctagttcgacatgtacaatgaattttttgtgctctttcttagtacctgaagagtgctagcaatacactttgtaccatacttttcaacacaatctttgcta |
2490145 |
T |
|
| Q |
419 |
ttagttcaaattcatgtggacctgttttcaaaacccgttagtttttcaatcaatgatataggttatgttgagaaagagtgtctaatagtgtgtactgtta |
518 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2490146 |
ttagttcaaattcatgtggacctgttttcaaaacccattagtttttcaatcaatgatataggttatgttgagaaagagtgtctaatagtgtgtactgtta |
2490245 |
T |
|
| Q |
519 |
gcattcatacnnnnnnnnnnnnngtggtggggcgaggggcacataaaaaatcaaaatctgcaatatattgttttgatggcatatttgtgtgtacacaaca |
618 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2490246 |
gcattcatac---ttttttttttgtggtggggcgaggggcacataaaaaatc--aatttgcaatatattgttttgatggcatatttgtgtgtacacaaca |
2490340 |
T |
|
| Q |
619 |
acaatcagaataccctgaaattcaatagtattttaagcacgtttaatcactatatcgttcatctttgattaccaggattatggttgggctaccgtctgca |
718 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
2490341 |
acaatcagaataccctgaaattccatagtattttaagcacgtttaatcactatatcgttcatctttgattaccaggattatggttgggctaccgtccgca |
2490440 |
T |
|
| Q |
719 |
gagaacagagaaaatatattgaggacccttttggctaaagagaaggtgcacgggggacttgattttaaggaactcgcaactatgactgaaggatatagtg |
818 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2490441 |
gagaacagagaaaatatattgaggacccttttggctaaagagaaggtgcacgggggacttgattttaaggaactcgcaactatgactgaaggatatagtg |
2490540 |
T |
|
| Q |
819 |
gaagtgatctgaaggtttttctctattattgttttcctatggccgtaacttaactatcgtgttacaatctacaaatgcttttcttatgtttagtttctga |
918 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2490541 |
gaagtgatctgaaggtttttctctattattgttttcctatggccgtaacttaactatcgtgttacaatctacaaatgcttttcttatgtttagtttctga |
2490640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 161; Significance: 2e-85; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 19 - 311
Target Start/End: Complemental strand, 41591240 - 41590948
Alignment:
| Q |
19 |
catgtctaccatcacttctaaatggtttggtgaagacgagaagaatgtccgagctttattcacactggcagccaaggtctccccaactattatatttgtc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||| ||| |||| |||||||||||||||||||||||| |
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|
| T |
41591240 |
catgtctaccatcacttctaaatggtttggtgaagatgagaagaatgttcgcgctttattcacacttgcatccaaagtctccccaactattatatttgtc |
41591141 |
T |
|
| Q |
119 |
gatgaggttgacagtatgcttgggcagcgaacaagagttggggaacatgaagccatgcggaaaataaagaatgaattcatgtccaattgggatggactta |
218 |
Q |
| |
|
||||||||||| || ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||| || || | |
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|
| T |
41591140 |
gatgaggttgatagcatgcttgggcaacgaacaagagttggggagcatgaagccatgcggaaaataaagaatgaatttatgtcccattgggacgggctca |
41591041 |
T |
|
| Q |
219 |
cctcgaaatcagaggatcgtattcttgtcctcgctgcaaccaataggccctttgacttggatgaagcaattattagacgatttgaaagaaggt |
311 |
Q |
| |
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| | ||| || || || || ||||| || || |||||||||||||| ||||||||||||||||| ||||| || ||||||||||| |||| |
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| T |
41591040 |
cgacaaaacaaggagagcgcatccttgttcttgcagcaaccaataggccatttgacttggatgaagctattataaggcgatttgaaaggaggt |
41590948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 836
Target Start/End: Complemental strand, 41589925 - 41589784
Alignment:
| Q |
695 |
attatggttgggctaccgtctgcagagaacagagaaaatatattgaggacccttttggctaaagagaaggtgcacgggggacttgattttaaggaactcg |
794 |
Q |
| |
|
|||||||| || ||||| |||| |||||||| ||||| || || ||||| |||||| | ||||| |||||| || | | |||||||||||||||| | |
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| T |
41589925 |
attatggtaggactaccatctgttgagaacagggaaaagattttaaggactcttttgtcaaaagaaaaggtggacaaagaaattgattttaaggaacttg |
41589826 |
T |
|
| Q |
795 |
caactatgactgaaggatatagtggaagtgatctgaaggttt |
836 |
Q |
| |
|
| || ||||| || ||||||| ||||||||| | ||||||| |
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|
| T |
41589825 |
cgaccatgacagacggatataccggaagtgatttaaaggttt |
41589784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 2e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 11094638 - 11094442
Alignment:
| Q |
20 |
atgtctaccatcacttctaaatggtttggtgaagacgagaagaatgtccgagctttattcacactggcagccaaggtctccccaactattatatttgtcg |
119 |
Q |
| |
|
||||| || |||||||| |||||||| || ||||| || ||||||||||||||||| ||||| || ||||| ||||| | || ||||||||||| |||| |
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|
| T |
11094638 |
atgtccacgatcacttcaaaatggttcggagaagatgaaaagaatgtccgagctttgttcacgctagcagctaaggttgctccgactattatattcgtcg |
11094539 |
T |
|
| Q |
120 |
atgaggttgacagtatgcttgggcagcgaacaagagttggggaacatgaagccatgcggaaaataaagaatgaattcatgtccaattgggatggact |
216 |
Q |
| |
|
|||| |||||||| ||||| || ||||| || ||||| || |||||||| |||||| |||| || || |||||||||||| | ||||||||||||| |
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|
| T |
11094538 |
atgaagttgacagcatgctcggtcagcgtactagagtcggagaacatgaggccatgaggaagattaaaaatgaattcatgacacattgggatggact |
11094442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 795 - 835
Target Start/End: Original strand, 45989453 - 45989493
Alignment:
| Q |
795 |
caactatgactgaaggatatagtggaagtgatctgaaggtt |
835 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| |||||| |
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|
| T |
45989453 |
caactatgacagaaggatatagtggaagtgatcttaaggtt |
45989493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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