View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8950_high_15 (Length: 492)

Name: NF8950_high_15
Description: NF8950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8950_high_15
NF8950_high_15
[»] chr3 (8 HSPs)
chr3 (104-483)||(11231550-11231928)
chr3 (19-103)||(11232305-11232389)
chr3 (197-314)||(31197330-31197447)
chr3 (199-314)||(31192621-31192736)
chr3 (199-314)||(52775577-52775692)
chr3 (197-314)||(52770869-52770986)
chr3 (389-439)||(11243664-11243714)
chr3 (439-480)||(11243595-11243635)
[»] chr8 (1 HSPs)
chr8 (19-199)||(17514007-17514182)
[»] scaffold0014 (2 HSPs)
scaffold0014 (197-314)||(97974-98091)
scaffold0014 (198-314)||(93337-93453)
[»] chr7 (2 HSPs)
chr7 (197-314)||(16254356-16254473)
chr7 (199-314)||(16259066-16259181)
[»] chr4 (4 HSPs)
chr4 (197-314)||(13985826-13985943)
chr4 (198-314)||(13990464-13990580)
chr4 (144-198)||(18983443-18983497)
chr4 (33-198)||(2671207-2671367)
[»] scaffold0013 (2 HSPs)
scaffold0013 (198-314)||(244968-245084)
scaffold0013 (197-269)||(251091-251163)
[»] chr6 (6 HSPs)
chr6 (197-314)||(26129076-26129193)
chr6 (117-199)||(1092000-1092082)
chr6 (22-88)||(1092469-1092535)
chr6 (201-305)||(29155892-29155996)
chr6 (199-314)||(26135990-26136106)
chr6 (171-199)||(34246669-34246697)
[»] chr5 (6 HSPs)
chr5 (117-199)||(16748222-16748305)
chr5 (201-307)||(30682527-30682633)
chr5 (104-196)||(29735700-29735793)
chr5 (33-192)||(37344214-37344369)
chr5 (201-307)||(30054701-30054807)
chr5 (202-250)||(30430880-30430928)
[»] chr1 (1 HSPs)
chr1 (204-296)||(13426843-13426935)
[»] scaffold0321 (1 HSPs)
scaffold0321 (146-199)||(1933-1986)


Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 104 - 483
Target Start/End: Complemental strand, 11231928 - 11231550
Alignment:
Q  104 tgatatctcttggaaataaataagcaaactatgcatagtcaaatttaataatggaatcaaaattttcagctcttgaatttgcaggtcaagaagcatgtta 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11231928 tgatatctcttggaaataaataagcaaactatgcatagtcaaatttaataatggaatcaaaattctcagctcttgaatttgcaggtcaagaagcatgtta 11231829  T
Q  204 aacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagagaaatcgagagaaaattctagattcattgaattgatat 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11231828 aacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagagaaatcgagagaaaattctagattcattgaattgatat 11231729  T
Q  304 gaaaacggttaattttcatgcaatgattatcaaattgagcaaaacaagactcacaccaaaatttactttcacaattctaaaactatgttaaattattaat 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11231728 gaaaacggttaattttcatgcaatgattatcaaattgagcaaaacaagactcacaccaaaatttactttcacaattctaaaactatgttaaattattaat 11231629  T
Q  404 caataatgagaagataatgaaactcaatttttgtattcagaatccatgcaattcaattccaaacacttccacattctcat 483  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11231628 caataatgagaagataatgaaactcaatttttgtattcagaatccatgcaattcaatt-caaacacttccacattctcat 11231550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 11232389 - 11232305
Alignment:
Q  19 aggattgaatagtataaattggatctcaaataaagacgaggtaggtttcgttgtgaagtacttatttatctcatgatgatgtgat 103  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11232389 aggatttaatagtataaattggatctcaaatagagacgaggtaggtttcgttgtgaagtacttatttatctcatgatgatgtgat 11232305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 197 - 314
Target Start/End: Original strand, 31197330 - 31197447
Alignment:
Q  197 catgttaaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattga 295  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |||| |||| ||||  |||||||||||||    
T  31197330 catgttaaacttcaccatatccatggtggaagttgaagaaatgcagaagcttaacaaagaagaaagagagaaaattgagataaaa-gctagattcattga 31197428  T
Q  296 attgatatgaaaacggtta 314  Q
    ||||| | |||||||||||    
T  31197429 attgagaagaaaacggtta 31197447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 199 - 314
Target Start/End: Original strand, 31192621 - 31192736
Alignment:
Q  199 tgttaaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattgaat 297  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |||| |||| ||||  |||||||||||||||    
T  31192621 tgttaaacttcaccatatccatggtggaagttgaagaaatgcagaagcttaacaaagaagaaagagagaaaattgagataaaa-gctagattcattgaat 31192719  T
Q  298 tgatatgaaaacggtta 314  Q
    ||| | |||||||||||    
T  31192720 tgagaagaaaacggtta 31192736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 199 - 314
Target Start/End: Complemental strand, 52775692 - 52775577
Alignment:
Q  199 tgttaaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattgaat 297  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |||| |||| ||||  |||||||||||||||    
T  52775692 tgttaaacttcaccatatccatggtggaagttgaagaaatgcagaagcttaacaaagaagaaagagagaaaattgagataaaa-gctagattcattgaat 52775594  T
Q  298 tgatatgaaaacggtta 314  Q
    ||| | |||||||||||    
T  52775593 tgagaagaaaacggtta 52775577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 197 - 314
Target Start/End: Complemental strand, 52770986 - 52770869
Alignment:
Q  197 catgttaaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattga 295  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |||| |||| ||||  |||||||||||||    
T  52770986 catgttaaacttcaccatatccatggtggaagttgaagaaatgcagaagcttaacaaagaagaaagagagaaaattgagataaaa-gctagattcattga 52770888  T
Q  296 attgatatgaaaacggtta 314  Q
    ||| | | |||||||||||    
T  52770887 atttagaagaaaacggtta 52770869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 389 - 439
Target Start/End: Complemental strand, 11243714 - 11243664
Alignment:
Q  389 tgttaaattattaatcaataatgagaagataatgaaactcaatttttgtat 439  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11243714 tgttaaattattaatcaataatgagaagataatgaaactcactttttgtat 11243664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 480
Target Start/End: Complemental strand, 11243635 - 11243595
Alignment:
Q  439 ttcagaatccatgcaattcaattccaaacacttccacattct 480  Q
    |||||||||||| |||||||||| ||||||||||||||||||    
T  11243635 ttcagaatccatacaattcaatt-caaacacttccacattct 11243595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 17514007 - 17514182
Alignment:
Q  19 aggattgaatagtataaattggatctcaaataaagacgaggtaggtttcgttgtgaagtacttatttatctcatgatgatgtgattgatatctcttggaa 118  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||| | |||| |||||||||||||| ||||||||||||||     ||||||| |||    
T  17514007 aggattgaatagcataaattggatctcaaataaagacaaggtaggttccattgtaaagtacttatttatttcatgatgatgtgac----atctcttcgaa 17514102  T
Q  119 ataaataagcaaactatgcatagtcaaatttaataatggaatcaaaattttcagctcttgaatttgcaggtcaagaagcat 199  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||| | |||| || |||||||||||||||||||||    
T  17514103 ataaataagcaaattatgcatagtcaaatttaa-aatggaatcaaaattgttagctattaaatttgcaggtcaagaagcat 17514182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 197 - 314
Target Start/End: Original strand, 97974 - 98091
Alignment:
Q  197 catgttaaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattga 295  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |||| |||| ||||  |||||||||||||    
T  97974 catgttaaacttcaccatatccatggtggaagttgaagaaatgcagaagcttaacaaagaagaaagagagaaaattgagataaaa-gctagattcattga 98072  T
Q  296 attgatatgaaaacggtta 314  Q
    ||||| | |||||||||||    
T  98073 attgagaagaaaacggtta 98091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 198 - 314
Target Start/End: Original strand, 93337 - 93453
Alignment:
Q  198 atgttaaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattgaa 296  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |||| |||| ||||  ||||||||||||||    
T  93337 atgttaaacttcaccatatccatggtggaagttgaagaaatgcagaagcttaacaaagaagaaagagagaaaattgagataaaa-gctagattcattgaa 93435  T
Q  297 ttgatatgaaaacggtta 314  Q
    |||| | |||||||||||    
T  93436 ttgagaagaaaacggtta 93453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 197 - 314
Target Start/End: Complemental strand, 16254473 - 16254356
Alignment:
Q  197 catgttaaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagagaaa-tcgagagaaaattctagattcattga 295  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |  ||| ||||  |||||||||||||    
T  16254473 catgttaaacttcaccatatccatggtgaaagttgaagaaatgcagaagcttaacaaagaagaaagagagaaaatttagataaaag-ctagattcattga 16254375  T
Q  296 attgatatgaaaacggtta 314  Q
    ||||| | |||||||||||    
T  16254374 attgagaagaaaacggtta 16254356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 199 - 314
Target Start/End: Complemental strand, 16259181 - 16259066
Alignment:
Q  199 tgttaaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattgaat 297  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||| |||| |||| ||||  |||||||||||||||    
T  16259181 tgttaaacttcaccatatccatggtgaaagttgaagaaatgaagaagcttaacaaagaagaaagagagaaaattgagataaaa-gctagattcattgaat 16259083  T
Q  298 tgatatgaaaacggtta 314  Q
    ||| | |||||||||||    
T  16259082 tgagaagaaaacggtta 16259066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 197 - 314
Target Start/End: Complemental strand, 13985943 - 13985826
Alignment:
Q  197 catgttaaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattga 295  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |||| |||| ||||  |||||||||||||    
T  13985943 catgttaaacttcaccatatccatggtggaagttgaagaaatgcagaagcttaacaaagaagaaagagagaaaattgagataaaa-gctagattcattga 13985845  T
Q  296 attgatatgaaaacggtta 314  Q
    ||||| | |||||||||||    
T  13985844 attgagaagaaaacggtta 13985826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 198 - 314
Target Start/End: Complemental strand, 13990580 - 13990464
Alignment:
Q  198 atgttaaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattgaa 296  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |||| |||| ||||  ||||||||||||||    
T  13990580 atgttaaacttcaccatatccatggtggaagttgaagaaatgcagaagcttaacaaagaagaaagagagaaaattgagataaaa-gctagattcattgaa 13990482  T
Q  297 ttgatatgaaaacggtta 314  Q
    |||| | |||||||||||    
T  13990481 ttgagaagaaaacggtta 13990464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 198
Target Start/End: Complemental strand, 18983497 - 18983443
Alignment:
Q  144 aaatttaataatggaatcaaaattttcagctcttgaatttgcaggtcaagaagca 198  Q
    ||||||| ||||| |||||||| ||||||||||||||||||||| ||| ||||||    
T  18983497 aaatttactaatgaaatcaaaagtttcagctcttgaatttgcagatcatgaagca 18983443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 198
Target Start/End: Complemental strand, 2671367 - 2671207
Alignment:
Q  33 taaattggatctcaaataaagacgaggtaggtttcgttgtgaagtacttatttatctcatgatgatgtgattgatatctcttggaaataaataa-gcaaa 131  Q
    |||||| ||||| ||||||||||  |||| ||| | ||  ||||||||| ||||| |||| |||||||| |    |||||| |||||||||||| ||| |    
T  2671367 taaattcgatctaaaataaagacagggtaagttccattacgaagtacttgtttatttcattatgatgtggt----atctctaggaaataaataaagcata 2671272  T
Q  132 ctatgcatagtcaaatttaataatggaatcaaaattttcagctcttgaatttgcaggtcaagaagca 198  Q
     ||||| | ||||||||||  |||| ||||||||||  ||||| |||| |||||| |||||||||||    
T  2671271 -tatgctt-gtcaaatttaccaatgaaatcaaaattcgcagctattgactttgcaagtcaagaagca 2671207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 198 - 314
Target Start/End: Original strand, 244968 - 245084
Alignment:
Q  198 atgttaaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattgaa 296  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |||| |||| ||||  ||||||||||||||    
T  244968 atgttaaacttcaccatatccatggtggaagttgaagaaatgcagaagcttaacaaagaagaaagagagaaaattgagataaaa-gctagattcattgaa 245066  T
Q  297 ttgatatgaaaacggtta 314  Q
    |||| | |||||||||||    
T  245067 ttgagaagaaaacggtta 245084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 197 - 269
Target Start/End: Original strand, 251091 - 251163
Alignment:
Q  197 catgttaaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagagaaa 269  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||    
T  251091 catgttaaacttcaccatatccatggtggaagttgaagaaatgcagaagcttaacaaagaagaaagagagaaa 251163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 197 - 314
Target Start/End: Complemental strand, 26129193 - 26129076
Alignment:
Q  197 catgttaaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattga 295  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||| |||| |||| ||||  |||||||||| ||    
T  26129193 catgttaaacttcaccatatccatggtgaaagttgaagaaatgcagaagcttaacaaagaagaaggagagaaaattgagataaaa-gctagattcataga 26129095  T
Q  296 attgatatgaaaacggtta 314  Q
    ||||| | |||||||||||    
T  26129094 attgagaagaaaacggtta 26129076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 117 - 199
Target Start/End: Complemental strand, 1092082 - 1092000
Alignment:
Q  117 aaataaataagcaaactatgcatagtcaaatttaataatggaatcaaaattttcagctcttgaatttgcaggtcaagaagcat 199  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||||| ||| |  ||||||||||||||||||||||||    
T  1092082 aaataaataagcgaactatgcatagtcaaatttactaatggaatcaaaattctcaccctttgaatttgcaggtcaagaagcat 1092000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 1092535 - 1092469
Alignment:
Q  22 attgaatagtataaattggatctcaaataaagacgaggtaggtttcgttgtgaagtacttatttatc 88  Q
    |||||||||| ||||||||||||||||||||||||||||||||| | |||| |||||||||||||||    
T  1092535 attgaatagtgtaaattggatctcaaataaagacgaggtaggttccattgtcaagtacttatttatc 1092469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 201 - 305
Target Start/End: Original strand, 29155892 - 29155996
Alignment:
Q  201 ttaaacttcaccatatccatggtgaaagtaga-agaaatgcagaagcttaacaaggaagaaagagagaaatcgagagaaaattctagattcattgaattg 299  Q
    |||||||||||| ||||||||||| || |||| | |||||||||| |||||  | |||||||||||||||   |||||||| ||||||||||||||||||    
T  29155892 ttaaacttcaccgtatccatggtggaattagagaaaaatgcagaaacttaaggaagaagaaagagagaaagatagagaaaa-tctagattcattgaattg 29155990  T
Q  300 atatga 305  Q
    | ||||    
T  29155991 aaatga 29155996  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 199 - 314
Target Start/End: Complemental strand, 26136106 - 26135990
Alignment:
Q  199 tgttaaacttcaccatat---ccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattg 294  Q
    |||||||||||||| |||   |||||||||| || ||||||||||||||||||| ||| |||||||||||| |||| |||| ||||  |||||||||| |    
T  26136106 tgttaaacttcaccctattttccatggtgaa-gt-gaagaaatgcagaagcttaccaaagaagaaagagagaaaattgagataaaa-gctagattcatag 26136010  T
Q  295 aattgatatgaaaacggtta 314  Q
    |||||| | |||||||||||    
T  26136009 aattgagaagaaaacggtta 26135990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 199
Target Start/End: Original strand, 34246669 - 34246697
Alignment:
Q  171 agctcttgaatttgcaggtcaagaagcat 199  Q
    |||||||||||||||||||||||||||||    
T  34246669 agctcttgaatttgcaggtcaagaagcat 34246697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 9e-28; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 117 - 199
Target Start/End: Original strand, 16748222 - 16748305
Alignment:
Q  117 aaataaataa-gcaaactatgcatagtcaaatttaataatggaatcaaaattttcagctcttgaatttgcaggtcaagaagcat 199  Q
    |||||||||| ||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  16748222 aaataaataaagcaaagtatgcatagtcaaatttactaatggaatcaaaattctcagctcttgaatttgcaggtcaagaagcat 16748305  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 201 - 307
Target Start/End: Complemental strand, 30682633 - 30682527
Alignment:
Q  201 ttaaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagagaaatcgagagaaaattctagattcattgaattga 300  Q
    |||||||||||||||||||||||| ||  |||  ||||||||||| | ||  | |||||||||||||||   ||||||||||||||||||||||||||||    
T  30682633 ttaaacttcaccatatccatggtggaatcagagaaaatgcagaagttcaatgaagaagaaagagagaaaattagagaaaattctagattcattgaattga 30682534  T
Q  301 tatgaaa 307  Q
    | |||||    
T  30682533 tctgaaa 30682527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 104 - 196
Target Start/End: Complemental strand, 29735793 - 29735700
Alignment:
Q  104 tgatatctcttggaaataaat-aagcaaactatgcatagtcaaatttaataatggaatcaaaattttcagctcttgaatttgcaggtcaagaag 196  Q
    ||||||||||||||||||||| ||| ||| ||   ||||||||||||| ||||||||||||||||||  |||||||||||||||| ||||||||    
T  29735793 tgatatctcttggaaataaattaagtaaaatacatatagtcaaatttactaatggaatcaaaattttatgctcttgaatttgcagatcaagaag 29735700  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 33 - 192
Target Start/End: Complemental strand, 37344369 - 37344214
Alignment:
Q  33 taaattggatctcaaataaagacgaggtaggtttcgttgtgaagtacttatttatctcatgatgatgtgattgatatctcttggaaataaat-aagcaaa 131  Q
    ||||||||||||| |||||||| |||||  ||| | ||| |||| |||||||||| ||| |||||||    |||||| |||||||||||||| |||||||    
T  37344369 taaattggatctccaataaagatgaggtgagttccattgcgaagcacttatttatttcacgatgatg----tgatatttcttggaaataaataaagcaaa 37344274  T
Q  132 ctatgcatagtcaaatttaataatggaatcaaaattttcagctcttgaatttgcaggtcaa 192  Q
     ||||  |||||| ||||| ||||| ||||||||||   |||||||||||||| |||||||    
T  37344273 -tatgtgtagtcatatttactaatgaaatcaaaattcatagctcttgaatttgaaggtcaa 37344214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 201 - 307
Target Start/End: Original strand, 30054701 - 30054807
Alignment:
Q  201 ttaaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagagaaatcgagagaaaattctagattcattgaattga 300  Q
    |||||||||||||||||||||||| ||  |||  ||||||||||||| ||| |  ||||||||||||||   |||  |||||||||||||||||||||||    
T  30054701 ttaaacttcaccatatccatggtggaatcagagaaaatgcagaagctcaacgaaaaagaaagagagaaaattagatcaaattctagattcattgaattga 30054800  T
Q  301 tatgaaa 307  Q
    | |||||    
T  30054801 tctgaaa 30054807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 30430880 - 30430928
Alignment:
Q  202 taaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaa 250  Q
    ||||||||||||||||||||||| ||  |||  ||||||||||||||||    
T  30430880 taaacttcaccatatccatggtggaatcagagaaaatgcagaagcttaa 30430928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 204 - 296
Target Start/End: Original strand, 13426843 - 13426935
Alignment:
Q  204 aacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagagaaatcgagagaaaattctagattcattgaa 296  Q
    ||||||||||||||||||||| ||  |||  ||||| |||| ||||   | |||||||||||||||    |||||||||||||||||||||||    
T  13426843 aacttcaccatatccatggtggaatcagagaaaatgaagaaacttagggaagaagaaagagagaaaattggagaaaattctagattcattgaa 13426935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 1933 - 1986
Alignment:
Q  146 atttaataatggaatcaaaattttcagctcttgaatttgcaggtcaagaagcat 199  Q
    ||||| ||||| |||||||| |   |||||||||||||||||||||||||||||    
T  1933 atttactaatgaaatcaaaaatcatagctcttgaatttgcaggtcaagaagcat 1986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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