View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8950_high_16 (Length: 454)
Name: NF8950_high_16
Description: NF8950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8950_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 56 - 447
Target Start/End: Complemental strand, 41106827 - 41106436
Alignment:
| Q |
56 |
ttggatggtgcgaaaatatcatccgatgtattgtttcattgattcaatagtggaatttctgcattcgtattctaccattacttgttaatgattggcagaa |
155 |
Q |
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| T |
41106827 |
ttggatggtgcgaaaatatcatccgatgtattgtttcattgattcaatagtggaatttctgcattcgtattctaccattacttgttaatgattggcagaa |
41106728 |
T |
|
| Q |
156 |
tccagatgagtttaccaaagatgttataaacaatgtattgcaaagaatcaaataaccaaaggaaaaattcatgctttaaaggtcgattctatttcttgtt |
255 |
Q |
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| T |
41106727 |
tccagatgagtttaccaaagatgttataaacaatgtattgcaaagaatcaaataaccaaaggaagaattcatgctttaaaggtcgattctatttcttgtt |
41106628 |
T |
|
| Q |
256 |
tcatattagtcattagataagtctgtaatttttattctcattatttggtcttcccatatatttaaggaactgctttagctcaacatagcgttatgtttgg |
355 |
Q |
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| T |
41106627 |
tcatattagtcattagataagtctgtaatttttattctcattatttggtcttcccatatatttaaggaactgctttagctcaacatagcgttatgtttgg |
41106528 |
T |
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| Q |
356 |
ggcagaatttgcacaagcatcttttggaagagctgtagcaaaatttccttgatgaggtccaaactttcattgttgttttacattaacacgaa |
447 |
Q |
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| T |
41106527 |
ggcagaatttgcacaagcatcttttggaagagctgtagcaaaatttccttgatgaggtccaaactttcattgttgttttacattaacacgaa |
41106436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 76
Target Start/End: Complemental strand, 41106864 - 41106834
Alignment:
| Q |
46 |
aaagtatttcttggatggtgcgaaaatatca |
76 |
Q |
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| T |
41106864 |
aaagtatttcttggatggtgcgaaaatatca |
41106834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 191 - 424
Target Start/End: Original strand, 35704779 - 35705000
Alignment:
| Q |
191 |
tattgcaaagaatcaaataaccaaaggaaaaattcatgctttaaaggtcgattctatttcttgtttcatattagtcattagataagtctgtaatttttat |
290 |
Q |
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| T |
35704779 |
tattccaaagaatcaaatcaccaaatgaaaaactcatgctttaaaggttgattttatttcttgctttat-------attagataagtgtgtaatttttgt |
35704871 |
T |
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| Q |
291 |
t-ctcattatttggtcttcccatatatttaaggaactgctttagctcaacatagcgttatgtttggggcagaatttgcacaagcatcttttggaagagct |
389 |
Q |
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| T |
35704872 |
tccccattatgcggtctttctatatattcaaggaactgatttaactcaacttagccttatgtgtggggcagaatt------cgcatcttttggaagagcg |
35704965 |
T |
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| Q |
390 |
gtagcaaaatttccttgatgaggtccaaactttca |
424 |
Q |
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| T |
35704966 |
gtagcagaattaacttgatgaggtcaaaactttca |
35705000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 141
Target Start/End: Original strand, 35704473 - 35704532
Alignment:
| Q |
82 |
tgtattgtttcattgattcaatagtggaatttctgcattcgtattctaccattacttgtt |
141 |
Q |
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| T |
35704473 |
tgtactgtctcattgattcaatagtggaagttctgcttttgtattctacaactacttgtt |
35704532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 143 - 238
Target Start/End: Complemental strand, 35445283 - 35445187
Alignment:
| Q |
143 |
atgattggcagaatccagatgagtttaccaaagatgttataaacaa-tgtattgcaaagaatcaaataaccaaaggaaaaattcatgctttaaaggt |
238 |
Q |
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| T |
35445283 |
atgatgggaagaatccagatgaattcaccaaagatgttataaacaactgtattgcaaagaatcaaatcactaaaggaaaaactgatgctttgaaggt |
35445187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 422
Target Start/End: Complemental strand, 35445085 - 35445012
Alignment:
| Q |
349 |
tgtttggggcagaatttgcacaagcatcttttggaagagctgtagcaaaatttccttgatgaggtccaaacttt |
422 |
Q |
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| T |
35445085 |
tgtttggggcaggatttgcgcaagcatcttttggaggaattggagcagaacttccctgatgaggttgaaacttt |
35445012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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