View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8950_high_18 (Length: 417)
Name: NF8950_high_18
Description: NF8950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8950_high_18 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 71 - 417
Target Start/End: Original strand, 14103409 - 14103771
Alignment:
| Q |
71 |
aaaagatataggttagaagatgtcaaccactcgaatagaactcaactatctcaataaattagtttatgcttttacacgtgtaaatatcttggtttgacaa |
170 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
14103409 |
aaaagatataggttggaagatgtcaaccactcgaatagaactcaactatctcaataaattagcttatacttttacacgtgtaaatatcttggtttgacaa |
14103508 |
T |
|
| Q |
171 |
aaagaaaacaattatttaatataaaatttgttgatgttgtttattatcatcttataggtacgaagtatcatcagtcgtttaacattaagatgataaagat |
270 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14103509 |
aaagaaaacaattatttaatacaaaatttgttgatgttgtttattatcatcttataggtacgaagtatcatcagtcgtttagcattaagatgataaagat |
14103608 |
T |
|
| Q |
271 |
ttttaataag----------taatgttctttaattat-aaaaaatagaatattatcaagagattgttactttgatttgaaaattaattttgta-----ca |
354 |
Q |
| |
|
|||||||||| || |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
14103609 |
ttttaataagtagattttaatattgttctttaattataaaaaaatagaatattattaagagattgttactttgatttgaaaattaattttgtacatgtca |
14103708 |
T |
|
| Q |
355 |
tgtcatgtcatccatttactttcatgtatttcttctattggtaatgattttgataataatatt |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14103709 |
tgtcatgtcatccatttactttcatgtatttcttctattggtaatgattttgataataatatt |
14103771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University