View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8950_high_2 (Length: 740)
Name: NF8950_high_2
Description: NF8950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8950_high_2 |
 | |
|
| [»] scaffold0164 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 602; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 15 - 722
Target Start/End: Complemental strand, 31274095 - 31273387
Alignment:
| Q |
15 |
cagagaaccccaaaatctgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatg |
114 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31274095 |
cagagaaccccaaaatctgaagagctgaatctctaggaaagaataaacctttgcctaaagatgttttaagatatttgagtactctcatagcagcagaatg |
31273996 |
T |
|
| Q |
115 |
atgaacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagc |
214 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31273995 |
atgaacttgtgtacgcttagcgaggaactggctcaattgctgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagc |
31273896 |
T |
|
| Q |
215 |
cttctgtaagcagatatatctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcagaaggagtggaaataggtttagagtgagtgagac |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31273895 |
cttctgtaagcagatatatctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcagaaggagtggaaataggtttagagtgagtgagac |
31273796 |
T |
|
| Q |
315 |
ctgaatcagcaagaagatctagacaatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaacccagaaagtacttgagttatcc |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
31273795 |
ctgaatcagcaagaagatctagacaatattttctctgacaaagtgagataccttgtttggagtgagcaacttgcaaacccagaaagtacttgagttgtcc |
31273696 |
T |
|
| Q |
415 |
taaatctttaattttgaaagaagcatgcaagatggatttgatgttgttaaactcagataatgaatttcctgctaaaataat---atctatatagaccaaa |
511 |
Q |
| |
|
||||||||||||||||||||||||| ||| || ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
31273695 |
taaatctttaattttgaaagaagcacgcaggacggatttgatgttgttaaactcag--aatgaatttcctgctaaaataatatcatctacatagaccaaa |
31273598 |
T |
|
| Q |
512 |
atgacagtgaatgtagtagctgaagatttggtaaatagtgaatgatatgagttagcatgcttgtatccttgagccaataacaaagaggtgagcctttcat |
611 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31273597 |
atgatggtgaatgtagtagctgaagatttggtaaatagtgaatgatatgagttagcatgcttgtatccttgagccaataacaaagaggtgagcctttcat |
31273498 |
T |
|
| Q |
612 |
accattttctagaggcttgcttcaatgcatagagggatttaaccaattatcaaacttgattgggtttagatgtcgtgataccaagtggcaactgcatgta |
711 |
Q |
| |
|
|||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
31273497 |
accattttctggaggctcgcttcaatccatagagggatttaaccaattatcaaacttgattgggtttagatgtagtgataccaagtggtaactgcatgta |
31273398 |
T |
|
| Q |
712 |
aacatcttctt |
722 |
Q |
| |
|
||||||||||| |
|
|
| T |
31273397 |
aacatcttctt |
31273387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 453; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 18 - 711
Target Start/End: Complemental strand, 26215554 - 26214869
Alignment:
| Q |
18 |
agaaccccaaaatctgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatg |
117 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||||| ||| |||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
26215554 |
agaaccccaaaatctgaagagctgaatctctaggaaaaaataaaccttttcctagagatgttttaagatatttgagcactctcatagcagcagaatgatg |
26215455 |
T |
|
| Q |
118 |
aacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagcctt |
217 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
26215454 |
aacttgggtaggcttagtgaggaactggctcaattgctgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacagcctaccaacaagcatt |
26215355 |
T |
|
| Q |
218 |
ctgtaagcagatatatctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcagaaggagtggaaataggtttagagtgagtgagacctg |
317 |
Q |
| |
|
||||||| ||| | ||||||||||||| ||||||||||| |||||||||| | ||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
26215354 |
ctgtaaggagagacatctgtgtatggttgactggaatcatgatgaagttttatagaagggtcagaaggagtggaaacagatttagagtgagtgagacctg |
26215255 |
T |
|
| Q |
318 |
aatcagcaagaagatctagacaatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaacccagaaagtacttgagttatcctaa |
417 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
26215254 |
aattagcaagaagatctagac-----------tgacaaagtgagatactttgtttagagtgagcaacttccaaacccagaaagtacttgagttgtcctaa |
26215166 |
T |
|
| Q |
418 |
atctttaattttgaaagaagcatgcaagatggatttgatgttgttaaactcagataatgaatttcctgctaaaataatatc---tatatagaccaaaatg |
514 |
Q |
| |
|
|||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||| || ||| ||||||| | |
|
|
| T |
26215165 |
atctttaattttgaaagaagtatgcaggatgaatttgatgttgttaaactcagataatgaattgcctgctaaaataatatcatctacataaaccaaaagg |
26215066 |
T |
|
| Q |
515 |
acagtgaatgtagtagctgaagatttggtaaatagtgaatgatatgagttagcatgcttgtatccttgagccaataacaaagaggtgagcctttcatacc |
614 |
Q |
| |
|
| |||||||| ||||||||| ||||||||||| |||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26215065 |
atagtgaatgcagtagctgatgatttggtaaagagtgaatgatctgagttagcatgcttgtaaccttgagccagtaacaaagaggtgagcctttcatacc |
26214966 |
T |
|
| Q |
615 |
attttctagaggcttgcttcaatgcatagagggatttaaccaattatcaaacttgattgggtttagatgtcgtgataccaagtggcaactgcatgta |
711 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||| ||||||||||| ||||||||| |||| ||||||||||| |
|
|
| T |
26214965 |
attttctagaggcttgcttcaatccatagagggattttaccaatttacaaacttgattaggtttagatgtagtgataccaggtggtaactgcatgta |
26214869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 551 - 682
Target Start/End: Complemental strand, 6532190 - 6532060
Alignment:
| Q |
551 |
gaatgatatgagttagcatgcttgtatccttgagccaataacaaagaggtgagcctttcataccattttctagaggcttgcttcaatgcatagagggatt |
650 |
Q |
| |
|
||||||| |||||| ||||||||||| |||||| ||| ||| ||||| || | | ||||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
6532190 |
gaatgatctgagttggcatgcttgtagccttgaaccagtaataaagatgttaacttttcataccattttctagaggcttgtttcaatccatagagggatt |
6532091 |
T |
|
| Q |
651 |
taaccaattatcaaacttgattgggtttagat |
682 |
Q |
| |
|
||||||||| |||||||| || ||||||||| |
|
|
| T |
6532090 |
taaccaatttgcaaacttg-ttaggtttagat |
6532060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 32 - 393
Target Start/End: Original strand, 37737098 - 37737459
Alignment:
| Q |
32 |
tgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatgaacttgtgtaggct |
131 |
Q |
| |
|
|||| ||| |||||||| ||||||| ||| |||| ||||||| | |||| || || |||| ||||||||||||| || | ||| | |||||| |||| |
|
|
| T |
37737098 |
tgaatagtggaatctctgggaaagagtaatcctttgcctggacaacttttgaggtacctgagcactctcatagcagcagtgtaatgtatttgtgttggct |
37737197 |
T |
|
| Q |
132 |
tagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagccttctgtaagcagatat |
231 |
Q |
| |
|
| | ||| || || ||||||||||| | | ||| ||||||||||||||||||||||| |||||||| | ||||||| | || || |||| ||| || |
|
|
| T |
37737198 |
tggtgagaaattgactcaattgttgtattataaaggtaatatcaggtcttgttgtgttcagatacaatagtctaccaatcaatctcctataagaagaaat |
37737297 |
T |
|
| Q |
232 |
atctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcagaaggagtggaaataggtttagagtgagtgagacctgaatcagcaagaaga |
331 |
Q |
| |
|
|||| || || |||||||||||| ||| ||||| | |||||| || ||||||||||| | |||||||| | ||||||||||||||||| | | |
|
|
| T |
37737298 |
atcttcataaggaggactggaatcattatgcagtttgatagaaggatctgaaggagtggatactggtttagaattgacaagacctgaatcagcaagcaaa |
37737397 |
T |
|
| Q |
332 |
tctagacaatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaacc |
393 |
Q |
| |
|
|| |||||||| ||||| ||||| | |||||| |||||||| | |||||||| || ||||| |
|
|
| T |
37737398 |
tccagacaatactttctttgacacaatgagattccttgtttagaatgagcaacctctaaacc |
37737459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 31 - 195
Target Start/End: Original strand, 9802095 - 9802259
Alignment:
| Q |
31 |
ctgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatgaacttgtgtaggc |
130 |
Q |
| |
|
|||||| || |||||||||| ||||| ||||||| ||||||| | | ||||| || |||||||||||||||||| || | |||| ||||| || |
|
|
| T |
9802095 |
ctgaagtgtggaatctctagtgaagaacaaacctttgcctggacaactcttaaggtacctgagtactctcatagcagcagtaaagtgaatatgtgtgggt |
9802194 |
T |
|
| Q |
131 |
ttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagata |
195 |
Q |
| |
|
|||| ||| || || |||||||||||||||| ||||||||||||||||||||||| || ||||| |
|
|
| T |
9802195 |
ttagtgagaaattgactcaattgttgagtaatgaaagtaatatcaggtcttgttgtattgagata |
9802259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 202
Target Start/End: Original strand, 49639396 - 49639458
Alignment:
| Q |
140 |
aactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaac |
202 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||||| || |||||||||||||| |
|
|
| T |
49639396 |
aactggctcaattgttgaacaacaaaagcaatatcaggtcttgtagttgtaagatacaacaac |
49639458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 65
Target Start/End: Original strand, 32611003 - 32611036
Alignment:
| Q |
32 |
tgaagagttgaatctctaggaaagaataaacctt |
65 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
|
|
| T |
32611003 |
tgaagaggtgaatctctaggaaagaataaacctt |
32611036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 15 - 717
Target Start/End: Original strand, 23373624 - 23374328
Alignment:
| Q |
15 |
cagagaaccccaaaa-tctgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaat |
113 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||| |||| |||||||||| || ||||| |
|
|
| T |
23373624 |
cagagaaccccaaaaatatgaagagttgaatctctaggaaataataaacctttgcctgaagatgttttaagatatctgagcactctcatagtagcagaat |
23373723 |
T |
|
| Q |
114 |
gatgaacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaag |
213 |
Q |
| |
|
| |||||||| |||||||| | ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| || |
|
|
| T |
23373724 |
ggtgaacttgggtaggcttggtaaggaactggctcaattgctgagtaacaaaagtaatatcaggtcttgctgtgttaagatgcaacaacctaccaactag |
23373823 |
T |
|
| Q |
214 |
ccttctgtaagcagatatatctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcagaaggagtggaaataggtttagagtgagtgaga |
313 |
Q |
| |
|
||||||||||||| | || | |||||| |||||||||||||| |||||||||| | ||||| ||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
23373824 |
ccttctgtaagcaaagatgaccgtgtat-gtggactggaatcatgatgaagttttatagaagtatcaaaaggagtggaagcaggtttagagtgagtgaga |
23373922 |
T |
|
| Q |
314 |
cctgaatcagcaagaagatctagacaatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaacccagaaagtacttgagttatc |
413 |
Q |
| |
|
||| |||||||||||| ||||||||||||||||| || ||||||||||||||| |||| | ||||||||||| |||||| ||| || ||||| | | |
|
|
| T |
23373923 |
cctaaatcagcaagaatatctagacaatattttcccttacaaagtgagataccctgttgataatgagcaacttctaaaccctaaaaatatttgagct-gc |
23374021 |
T |
|
| Q |
414 |
ctaaatctttaattttgaaagaagcatgcaagatggatttgatgttgttaaactcagataatgaatttcctgctaaaataat---atctatatagaccaa |
510 |
Q |
| |
|
||||||| || ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||| |||||| ||||| ||| ||||| |
|
|
| T |
23374022 |
ctaaatcctttattttgaaagaagcatgcaggatggatttgatgttgttgaactcagataatgaatttcatgcttgaataatatcatctacatataccaa |
23374121 |
T |
|
| Q |
511 |
aatgacagtgaatgtagtagctgaagatttggtaaatagtgaatgatatgagttagcatgcttgtatccttgagccaataacaaagaggtgagcctttca |
610 |
Q |
| |
|
|| || | |||||| | ||||| ||||||||||| |||||||| |||| ||||||||||||||| |||||||||| || |||||||||||||||||| |
|
|
| T |
23374122 |
aaagaaattgaatgcaatagctttggatttggtaaaaagtgaatggtatgggttagcatgcttgtaaccttgagccagcaataaagaggtgagcctttca |
23374221 |
T |
|
| Q |
611 |
taccattttctagaggcttgcttcaatgcatagagggatttaaccaattatcaaacttgattgggtttagatgtcgtgataccaagtggcaactgcatgt |
710 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||| |||| ||||| |||| ||||||||| |||| || ||||||| |
|
|
| T |
23374222 |
taccattttctagaggcttgctttaatccatagagggatttaaccaatttacaaactagattaggtttcaatgtagtgataccaggtggtaattgcatgt |
23374321 |
T |
|
| Q |
711 |
aaacatc |
717 |
Q |
| |
|
|||||| |
|
|
| T |
23374322 |
taacatc |
23374328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 44 - 267
Target Start/End: Complemental strand, 19428467 - 19428244
Alignment:
| Q |
44 |
tctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatgaacttgtgtaggcttagcgaggaact |
143 |
Q |
| |
|
|||||||||||||||||||| | || |||| ||| |||||| || |||| ||||||||||||| | |||| |||||||| ||||| |||| ||||| | |
|
|
| T |
19428467 |
tctctaggaaagaataaacccttgcttggaaatgatttaaggtacctgagcactctcatagcagcataatggtgaacttgagtaggtttagtaaggaatt |
19428368 |
T |
|
| Q |
144 |
ggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagccttctgtaagcagatatatctgtgtatgg |
243 |
Q |
| |
|
|||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||| | |||||| |||||||| || ||||||||||| |
|
|
| T |
19428367 |
ggctcaattgttgagtgacaaaggtaatgtcaggtcttgttgtgttgagatacaacaacctaccaactaaccttctataagcagaaatgtctgtgtatgg |
19428268 |
T |
|
| Q |
244 |
tggactggaatcacgatgaagttt |
267 |
Q |
| |
|
|||||||||||| |||||||||| |
|
|
| T |
19428267 |
gggactggaatcatgatgaagttt |
19428244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 202
Target Start/End: Complemental strand, 53979903 - 53979841
Alignment:
| Q |
140 |
aactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaac |
202 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||||| || |||||||||||||| |
|
|
| T |
53979903 |
aactggctcaattgttgaacaacaaaagcaatatcaggtcttgtagttgtaagatacaacaac |
53979841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 115 - 447
Target Start/End: Original strand, 4939057 - 4939389
Alignment:
| Q |
115 |
atgaacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagc |
214 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| | ||||||||||| ||||| |||||||||||| | || ||||| || | | ||| ||| | |
|
|
| T |
4939057 |
atgaacttgtgtaggcttagtgaggaactggctaagttgttgagtaatgaaagtgatatcaggtcttttggtattaaggtatagaagtctatcaatcaat |
4939156 |
T |
|
| Q |
215 |
cttctgtaagcagatatatctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcagaaggagtggaaataggtttagagtgagtgagac |
314 |
Q |
| |
|
||||| || | ||| || ||| || || | ||||||||| |||| | || ||||| || |||||||| |||||||||||||| || | ||| |||| |
|
|
| T |
4939157 |
cttctatatgaagaaatgtcttcataaggagagctggaatcatgatgtaacttcacagatggatcagaaggtgtggaaataggtttggaataagtaagac |
4939256 |
T |
|
| Q |
315 |
ctgaatcagcaagaagatctagacaatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaacccagaaagtacttgagttatcc |
414 |
Q |
| |
|
||||||||| | |||||| | ||||||||||||||| ||| | |||||||| |||| | ||||| || || ||||| ||| | || || |||| ||| |
|
|
| T |
4939257 |
ttgaatcagccaaaagatccaaacaatattttctctggcaatgagagataccctgttgagaatgagccacctctaaaccaagataatattttagttgtcc |
4939356 |
T |
|
| Q |
415 |
taaatctttaattttgaaagaagcatgcaagat |
447 |
Q |
| |
|
|| |||||| |||||||| |||||||||||||| |
|
|
| T |
4939357 |
tagatctttgattttgaaggaagcatgcaagat |
4939389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 115 - 447
Target Start/End: Original strand, 5024147 - 5024479
Alignment:
| Q |
115 |
atgaacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagc |
214 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| | ||||||||||| ||||| |||||||||||| | || ||||| || | | ||| ||| | |
|
|
| T |
5024147 |
atgaacttgtgtaggcttagtgaggaactggctaagttgttgagtaatgaaagtgatatcaggtcttttggtattaaggtatagaagtctatcaatcaat |
5024246 |
T |
|
| Q |
215 |
cttctgtaagcagatatatctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcagaaggagtggaaataggtttagagtgagtgagac |
314 |
Q |
| |
|
||||| || | ||| || ||| || || | ||||||||| |||| | || ||||| || |||||||| |||||||||||||| || | ||| |||| |
|
|
| T |
5024247 |
cttctatatgaagaaatgtcttcataaggagagctggaatcatgatgtaacttcacagatggatcagaaggtgtggaaataggtttggaataagtaagac |
5024346 |
T |
|
| Q |
315 |
ctgaatcagcaagaagatctagacaatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaacccagaaagtacttgagttatcc |
414 |
Q |
| |
|
||||||||| | |||||| | ||||||||||||||| ||| | |||||||| |||| | ||||| || || ||||| ||| | || || |||| ||| |
|
|
| T |
5024347 |
ttgaatcagccaaaagatccaaacaatattttctctggcaatgagagataccctgttgagaatgagccacctctaaaccaagataatattttagttgtcc |
5024446 |
T |
|
| Q |
415 |
taaatctttaattttgaaagaagcatgcaagat |
447 |
Q |
| |
|
|| |||||| |||||||| |||||||||||||| |
|
|
| T |
5024447 |
tagatctttgattttgaaggaagcatgcaagat |
5024479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 32 - 393
Target Start/End: Complemental strand, 23682641 - 23682280
Alignment:
| Q |
32 |
tgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatgaacttgtgtaggct |
131 |
Q |
| |
|
|||| ||| |||||| | ||||| | ||| |||| ||||||| | |||| ||||| |||| ||||||||||||| | | ||| |||||||| |||| |
|
|
| T |
23682641 |
tgaatagtggaatctttgggaaaaagtaatcctttgcctggacaacttttgagatacctgagcactctcatagcagcaatgtaatgtacttgtgttggct |
23682542 |
T |
|
| Q |
132 |
tagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagccttctgtaagcagatat |
231 |
Q |
| |
|
| | ||| || || ||||||||||| || | ||| ||||||||||||||||||||||| |||||||| | ||||||| | || || |||| ||| || |
|
|
| T |
23682541 |
tggtgagaaattgactcaattgttgtgttataaaggtaatatcaggtcttgttgtgttcagatacaatagtctaccaatcaatctcctataagaagaaat |
23682442 |
T |
|
| Q |
232 |
atctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcagaaggagtggaaataggtttagagtgagtgagacctgaatcagcaagaaga |
331 |
Q |
| |
|
|||| || | |||||||||||| ||| | ||| | |||||| || ||||||||||| | |||||||| | ||||||||||||||||| | | |
|
|
| T |
23682441 |
atcttcataaagaggactggaatcattatgcaatttgatagaaggatctgaaggagtggatactggtttagaattgacaagacctgaatcagcaagcaaa |
23682342 |
T |
|
| Q |
332 |
tctagacaatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaacc |
393 |
Q |
| |
|
|| |||||||| ||||| ||||| | ||| ||||||||||| | |||||||| || ||||| |
|
|
| T |
23682341 |
tccagacaatactttctttgacacaatgaaataccttgtttagaatgagcaacctctaaacc |
23682280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 578 - 681
Target Start/End: Original strand, 4941677 - 4941780
Alignment:
| Q |
578 |
ccttgagccaataacaaagaggtgagcctttcataccattttctagaggcttgcttcaatgcatagagggatttaaccaattatcaaacttgattgggtt |
677 |
Q |
| |
|
|||||||||| ||| |||| |||||||||||||||||||||||| ||| ||||| || ||||||| ||||||| ||||| ||||||||||| |||| |
|
|
| T |
4941677 |
ccttgagccagtaataaagcagtgagcctttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgattaggtt |
4941776 |
T |
|
| Q |
678 |
taga |
681 |
Q |
| |
|
|||| |
|
|
| T |
4941777 |
taga |
4941780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 578 - 681
Target Start/End: Original strand, 5026757 - 5026860
Alignment:
| Q |
578 |
ccttgagccaataacaaagaggtgagcctttcataccattttctagaggcttgcttcaatgcatagagggatttaaccaattatcaaacttgattgggtt |
677 |
Q |
| |
|
|||||||||| ||| |||| |||||||||||||||||||||||| ||| ||||| || ||||||| ||||||| ||||| ||||||||||| |||| |
|
|
| T |
5026757 |
ccttgagccagtaataaagcagtgagcctttcataccattttctactggcctgctttaaaccatagagagatttaatcaatttgcaaacttgattaggtt |
5026856 |
T |
|
| Q |
678 |
taga |
681 |
Q |
| |
|
|||| |
|
|
| T |
5026857 |
taga |
5026860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 566 - 681
Target Start/End: Complemental strand, 16157946 - 16157831
Alignment:
| Q |
566 |
gcatgcttgtatccttgagccaataacaaagaggtgagcctttcataccattttctagaggcttgcttcaatgcatagagggatttaaccaattatcaaa |
665 |
Q |
| |
|
|||||||| ||||||||||||| ||| |||| | |||||||||||||||||||||| ||| ||||| || ||||||| ||||| ||||||| |||| |
|
|
| T |
16157946 |
gcatgcttatatccttgagccagtaataaagcagcgagcctttcataccattttctactggcctgctttaaaccatagagagattttaccaatttacaaa |
16157847 |
T |
|
| Q |
666 |
cttgattgggtttaga |
681 |
Q |
| |
|
|| |||| |||||||| |
|
|
| T |
16157846 |
ctcgattaggtttaga |
16157831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 5e-21; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 17 - 393
Target Start/End: Complemental strand, 3005339 - 3004963
Alignment:
| Q |
17 |
gagaaccccaaaatctgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgat |
116 |
Q |
| |
|
||||| |||| || ||||| ||| |||||||| ||||||| ||| |||| ||||||| | |||| || || |||| ||||||||||||| || | || |
|
|
| T |
3005339 |
gagaaacccagaagctgaatagtggaatctctgggaaagagtaatcctttgcctggataacttttgaggtacctgagcactctcatagcagcagtgtaat |
3005240 |
T |
|
| Q |
117 |
gaacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagcct |
216 |
Q |
| |
|
| | |||||| ||||| | ||| || || ||||||||||| || | ||| ||||||||||||||||||||||| |||||||| | ||||||| | || |
|
|
| T |
3005239 |
gtatttgtgttggcttggtgagaaattgactcaattgttgtgttataaaggtaatatcaggtcttgttgtgttcagatacaatagtctaccaatcaatct |
3005140 |
T |
|
| Q |
217 |
tctgtaagcagatatatctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcagaaggagtggaaataggtttagagtgagtgagacct |
316 |
Q |
| |
|
|| |||| ||| |||||| || | |||||||||||| ||| ||||| | |||| | || ||||||||||| | |||||||| | |||||| |
|
|
| T |
3005139 |
cctataagaagaaatatcttcataaagaggactggaatcattatgcagtttgatagaacgatctgaaggagtggatactggtttagaattgacaagacct |
3005040 |
T |
|
| Q |
317 |
gaatcagcaagaagatctagacaatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaacc |
393 |
Q |
| |
|
||||||||||| | ||| |||||||| ||||| ||||| | |||||| |||||||| | |||||||| || ||||| |
|
|
| T |
3005039 |
gaatcagcaagcaaatccagacaatactttctttgacacaatgagattccttgtttagaatgagcaacctctaaacc |
3004963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 80 - 183
Target Start/End: Original strand, 19813037 - 19813140
Alignment:
| Q |
80 |
ttaagatatttgagtactctcatagcagaagaatgatgaacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtc |
179 |
Q |
| |
|
||||||||| |||||||||||||||||| | || |||| |||||||| || | ||| ||||||||||||||||| |||| ||| ||||||| ||||| |
|
|
| T |
19813037 |
ttaagatatctgagtactctcatagcagcattatagtgaatgtgtgtaggtttggagagaaactggctcaattgttgtgtaataaaggtaatattaggtc |
19813136 |
T |
|
| Q |
180 |
ttgt |
183 |
Q |
| |
|
|||| |
|
|
| T |
19813137 |
ttgt |
19813140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 122 - 195
Target Start/End: Complemental strand, 18477861 - 18477788
Alignment:
| Q |
122 |
tgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagata |
195 |
Q |
| |
|
|||||||| ||| ||| || |||||||||| ||||||||||||||||||||||||||| ||||| || ||||| |
|
|
| T |
18477861 |
tgtgtaggtttattgagaaattggctcaattcttgagtaacaaaagtaatatcaggtctagttgtattgagata |
18477788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 241
Target Start/End: Original strand, 18480003 - 18480101
Alignment:
| Q |
143 |
tggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagccttctgtaagcagatatatctgtgtat |
241 |
Q |
| |
|
||||||||||||||||||| || ||||| || ||||| |||| || | |||||| || || |||||||| ||||||||||||| |||||||||||| |
|
|
| T |
18480003 |
tggctcaattgttgagtaatgaaggtaatgtctggtctagttgcattcaaatacaataatctcccaacaagtcttctgtaagcaggaatatctgtgtat |
18480101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 202
Target Start/End: Original strand, 25469 - 25531
Alignment:
| Q |
140 |
aactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaac |
202 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||||| || |||||||||||||| |
|
|
| T |
25469 |
aactggctcaattgttgaacaacaaaagcaatatcaggtcttgtagttgtaagatacaacaac |
25531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 204
Target Start/End: Original strand, 18550969 - 18551027
Alignment:
| Q |
146 |
ctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacct |
204 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| || ||||| | |||||| |
|
|
| T |
18550969 |
ctcaattgttgagtaacaaaagtgatatcaggtcttgttgtattgagataaagcaacct |
18551027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 338 - 480
Target Start/End: Complemental strand, 44230733 - 44230591
Alignment:
| Q |
338 |
caatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaacccagaaagtacttgagttatcctaaatctttaattttgaaagaag |
437 |
Q |
| |
|
||||||||||| ||||| | ||||| ||||| || | ||||||||||| | ||| |||| ||||| | || ||| |||||||| || |||||||||| |
|
|
| T |
44230733 |
caatattttctttgacataaagagatgccttgcttagaatgagcaacttcaagacctagaacatacttcaattgtcccaaatctttgatcttgaaagaag |
44230634 |
T |
|
| Q |
438 |
catgcaagatggatttgatgttgttaaactcagataatgaatt |
480 |
Q |
| |
|
||||| ||||||||||||| | |||||||||||||||||| |
|
|
| T |
44230633 |
aatgcagaatggatttgatgtgttgaaactcagataatgaatt |
44230591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 15194885 - 15194824
Alignment:
| Q |
140 |
aactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaa |
201 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||||| || ||||||||||||| |
|
|
| T |
15194885 |
aactggctcaattgttgaacaacaaaagcaatatcaggtcttgtagttgtaagatacaacaa |
15194824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 143 - 243
Target Start/End: Complemental strand, 19873207 - 19873107
Alignment:
| Q |
143 |
tggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagccttctgtaagcagatatatctgtgtatg |
242 |
Q |
| |
|
||||||||||||||||||| || ||||| | ||||| |||| || | |||||| || || |||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
19873207 |
tggctcaattgttgagtaatgaaggtaatgtatggtctagttgcattcaaatacaataatctcccaacaagtcttctgtaagcaggaatatctgtgtatg |
19873108 |
T |
|
| Q |
243 |
g |
243 |
Q |
| |
|
| |
|
|
| T |
19873107 |
g |
19873107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 377 - 456
Target Start/End: Complemental strand, 15450376 - 15450297
Alignment:
| Q |
377 |
tgagcaacttccaaacccagaaagtacttgagttatcctaaatctttaattttgaaagaagcatgcaagatggatttgat |
456 |
Q |
| |
|
|||||||| || | ||| || ||||| ||||||| |||||||||||||| ||||| |||||||||| |||||||||||| |
|
|
| T |
15450376 |
tgagcaacctcaataccaaggaagtatttgagttggcctaaatctttaatcttgaaggaagcatgcaggatggatttgat |
15450297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 329 - 402
Target Start/End: Original strand, 26465343 - 26465416
Alignment:
| Q |
329 |
agatctagacaatattttctctgacaaagtgagataccttgtttgaagtgagcaacttccaaacccagaaagta |
402 |
Q |
| |
|
||||| |||||||||||||| || ||||| ||||| |||||| | | ||||||||||| ||||| |||||||| |
|
|
| T |
26465343 |
agatcaagacaatattttctttggcaaagagagatgccttgtgaggaatgagcaacttctaaaccaagaaagta |
26465416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 18255752 - 18255691
Alignment:
| Q |
140 |
aactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaa |
201 |
Q |
| |
|
||||| |||||||||||| |||||||| ||||||||||||||| || ||||||||||||| |
|
|
| T |
18255752 |
aactgactcaattgttgaacaacaaaagcaatatcaggtcttgtagttgtaagatacaacaa |
18255691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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