View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8950_high_20 (Length: 403)
Name: NF8950_high_20
Description: NF8950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8950_high_20 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 13 - 403
Target Start/End: Complemental strand, 39300331 - 39299941
Alignment:
| Q |
13 |
cacagacgagagagatattcatgttgaaaaagacagagtcccaaagatgacaactcattttgaacaacttacagtggtagacaaggaaccaccacatggt |
112 |
Q |
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| T |
39300331 |
cacaaacgagagagatattcatgttgaaaaagacagagtcccaaagatgactacccattttgaacaacttacagtggtagacaaggaaccaccacatggt |
39300232 |
T |
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| Q |
113 |
agcattgaagcattacaaggtggtgaaatgaacaaagatcatgcaggaaaagccattggagatattggtggaagaggaagatcaagagagactcatgaac |
212 |
Q |
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| T |
39300231 |
agcattgaagcattacaaggtggtgaaatgaacaaagatcatgcaggaaaagccattggagatattggtggaagaggaagatcaagagagactcatgaac |
39300132 |
T |
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| Q |
213 |
ttggttcaaatgtgaagcagagtgatagggatcatcatcatgctgctgctaccaaccttggacacaaacaaggttttcagtctcactctgatcaaaatgt |
312 |
Q |
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| T |
39300131 |
ttggttcaaatgtgaagcagagtgatagggatcatcatcatgctgctgctacgaaccttggtcacaagcaaggttttcagtctcactctgatcaaaatgt |
39300032 |
T |
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| Q |
313 |
gaaacagagtgagagggatcgtcatcatgctacaaatgtagttggacacagacaaggtgcagaaggcatgaaagaaagaggtgaaggtttg |
403 |
Q |
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| T |
39300031 |
gaaacagagtgagagggatcgtcatcatgctacaaatgtagttggacacagacaaggtgcagaaggcatgaaagaaagaggtgaaggtttg |
39299941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 39299940 - 39299888
Alignment:
| Q |
170 |
ggagatattggtggaagaggaagatcaagagagactcatgaacttggttcaaa |
222 |
Q |
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| T |
39299940 |
ggagatattggtggaagaggaagagaaagagagagccatgaacttggttcaaa |
39299888 |
T |
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