View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8950_high_26 (Length: 328)
Name: NF8950_high_26
Description: NF8950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8950_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 44731580 - 44731280
Alignment:
| Q |
1 |
gaagaaccaaggtcaatgtggtaagtatcaatctaataagtaatgtactcaattctatatgtgataaaaaatttaattgccatttaactataattaattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44731580 |
gaagaaccaaggtcaatgtggtaagtatcaatctaataagtgatgtactcaattctatatgtgataaaaaatttaattgccatttaactataattaattt |
44731481 |
T |
|
| Q |
101 |
ttaatttacgtttttcgtaggatgttgttgggcattttcagctgttgcagcaaccgaaggaattactaagttgagtactggaaagttggtctctttatcg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44731480 |
ttaatttacgtttttcgtaggatgttgttgggcattttcagctgttgcagcaaccgaaggaattactaagttgagtactggaaagttggtctctttatcg |
44731381 |
T |
|
| Q |
201 |
gaacaagaacttgttgattgtgacacaaaaggtgtagaccaaggttgtgagggtggtcttatggatgatgctttcaaattcatcattcaaaatcatggac |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
44731380 |
gaacaagaacttgttgattgtgacacaaaaggtgtggaccaaggttgtgagggtggtcttatggacgatgctttcaaattcatcattcaaaatcacggac |
44731281 |
T |
|
| Q |
301 |
t |
301 |
Q |
| |
|
| |
|
|
| T |
44731280 |
t |
44731280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 30720145 - 30719836
Alignment:
| Q |
1 |
gaagaaccaaggtcaatgtggtaagtatcaatctaataagtaatgtactcaattcta---tatgtgataaaaaatttaattgccatttaactataattaa |
97 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||| || |||||| | |||||| | |||||||| ||| ||| ||||| |||| |||| || |||| |
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|
| T |
30720145 |
gaagaaccaaggtcaatgtggtaagtgtctatctattatgtaatgcattcaattacaaactatgtgatcaaatattgaattgtcattaaactctagttaa |
30720046 |
T |
|
| Q |
98 |
tttttaatttacgtttttcgtaggatgttgttgggcattttcagctgttgcagcaaccgaaggaattactaagttgagtactggaaagttggtctcttta |
197 |
Q |
| |
|
|||| ||||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||| ||||||||||||||| |
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|
| T |
30720045 |
tttt-aatttaccttttt-gtaggatgttgttgggcattttctgctgttgcggcaaccgaaggaatccataagttgagtactgggaagttggtctcttta |
30719948 |
T |
|
| Q |
198 |
tcggaacaagaacttgttgattgtgacacaaaaggtgtagaccaaggttgtgagggtggtcttatggatgatgctttcaaattcatcattcaaaatcatg |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30719947 |
tcggaacaagaacttgttgattgtgacacaaaaggtgtagaccaaggttgtgagggtggtcttatggatgatgctttcaaattcatcattcaaaatcatg |
30719848 |
T |
|
| Q |
298 |
gactcaacactg |
309 |
Q |
| |
|
|||||||||||| |
|
|
| T |
30719847 |
gactcaacactg |
30719836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 30881214 - 30881523
Alignment:
| Q |
1 |
gaagaaccaaggtcaatgtggtaagtatcaatctaataagtaatgtactcaattcta---tatgtgataaaaaatttaattgccatttaactataattaa |
97 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||| || |||||| | |||||| | |||||||| ||| ||| ||||| |||| || | || |||| |
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|
| T |
30881214 |
gaagaaccaaggtcaatgtggtaagtgtctatctattatgtaatgcattcaattacaaactatgtgatcaaatattgaattgtcattaaattctagttaa |
30881313 |
T |
|
| Q |
98 |
tttttaatttacgtttttcgtaggatgttgttgggcattttcagctgttgcagcaaccgaaggaattactaagttgagtactggaaagttggtctcttta |
197 |
Q |
| |
|
|||| ||||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||| ||||||||||||||| |
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|
| T |
30881314 |
tttt-aatttaccttttt-gtaggatgttgttgggcattttctgctgttgcggcaaccgaaggaatccataagttgagtactgggaagttggtctcttta |
30881411 |
T |
|
| Q |
198 |
tcggaacaagaacttgttgattgtgacacaaaaggtgtagaccaaggttgtgagggtggtcttatggatgatgctttcaaattcatcattcaaaatcatg |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30881412 |
tcggaacaagaacttgttgattgtgacacaaaaggtgtagaccaaggttgtgagggtggtcttatggatgatgctttcaaattcatcattcaaaatcatg |
30881511 |
T |
|
| Q |
298 |
gactcaacactg |
309 |
Q |
| |
|
|||||||||||| |
|
|
| T |
30881512 |
gactcaacactg |
30881523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 30892297 - 30892606
Alignment:
| Q |
1 |
gaagaaccaaggtcaatgtggtaagtatcaatctaataagtaatgtactcaattcta---tatgtgataaaaaatttaattgccatttaactataattaa |
97 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||| || |||||| | |||||| | |||||||| ||| ||| ||||| |||| |||| || |||| |
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|
| T |
30892297 |
gaagaaccaaggtcaatgtggtaagtgtctatctattatgtaatgcattcaattacaaactatgtgatcaaatattgaattgtcattaaactctagttaa |
30892396 |
T |
|
| Q |
98 |
tttttaatttacgtttttcgtaggatgttgttgggcattttcagctgttgcagcaaccgaaggaattactaagttgagtactggaaagttggtctcttta |
197 |
Q |
| |
|
|||| ||||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
30892397 |
tttt-aatttaccttttt-gtaggatgttgttgggcattttctgctgttgcggcaaccgaaggaatccataagttgagtactgggaagttggtctcttta |
30892494 |
T |
|
| Q |
198 |
tcggaacaagaacttgttgattgtgacacaaaaggtgtagaccaaggttgtgagggtggtcttatggatgatgctttcaaattcatcattcaaaatcatg |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30892495 |
tcggaacaagaacttgttgattgtgacacaaaaggtgtagaccaaggttgtgagggtggtcttatggatgatgctttcaaattcatcattcaaaatcatg |
30892594 |
T |
|
| Q |
298 |
gactcaacactg |
309 |
Q |
| |
|
||||| |||||| |
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|
| T |
30892595 |
gactccacactg |
30892606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 99 - 301
Target Start/End: Complemental strand, 16867867 - 16867667
Alignment:
| Q |
99 |
ttttaatttacgtttttcgtaggatgttgttgggcattttcagctgttgcagcaaccgaaggaattactaagttgagtactggaaagttggtctctttat |
198 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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|
| T |
16867867 |
ttttaatttacctttt--gtaggatgttgttgggcgttttctgctgttgcagcaaccgaaggaattcataagttgagtactggaaagttgatctctttat |
16867770 |
T |
|
| Q |
199 |
cggaacaagaacttgttgattgtgacacaaaaggtgtagaccaaggttgtgagggtggtcttatggatgatgctttcaaattcatcattcaaaatcatgg |
298 |
Q |
| |
|
| ||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
16867769 |
cagaacaagaactcgttgactgtgacacgaaaggtgtggaccaaggttgtgagggtggtcttatggacgatgctttcaaattcatcattcaaaatcatgg |
16867670 |
T |
|
| Q |
299 |
act |
301 |
Q |
| |
|
||| |
|
|
| T |
16867669 |
act |
16867667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 117 - 309
Target Start/End: Original strand, 8898946 - 8899138
Alignment:
| Q |
117 |
gtaggatgttgttgggcattttcagctgttgcagcaaccgaaggaattactaagttgagtactggaaagttggtctctttatcggaacaagaacttgttg |
216 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8898946 |
gtaggatgttgttgggcgttttctgctgttgcagcaaccgaaggaattcataagttgagtactggaaagttggtctctttatcagaacaagaacttgttg |
8899045 |
T |
|
| Q |
217 |
attgtgacacaaaaggtgtagaccaaggttgtgagggtggtcttatggatgatgctttcaaattcatcattcaaaatcatggactcaacactg |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8899046 |
attgtgacacaaaaggtgtagaccaaggttgtgagggtggtcttatggatgatgctttcaaattcatcattcaaaatcatggactcaacactg |
8899138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 117 - 301
Target Start/End: Original strand, 31727104 - 31727288
Alignment:
| Q |
117 |
gtaggatgttgttgggcattttcagctgttgcagcaaccgaaggaattactaagttgagtactggaaagttggtctctttatcggaacaagaacttgttg |
216 |
Q |
| |
|
||||||||||||||||| ||||| || |||||| |||||||||||||| |||||||| || ||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
31727104 |
gtaggatgttgttgggcgttttctgcggttgcatcaaccgaaggaattcataagttgaccacaggaaatttggtctctttatcagaacaagaacttgttg |
31727203 |
T |
|
| Q |
217 |
attgtgacacaaaaggtgtagaccaaggttgtgagggtggtcttatggatgatgctttcaaattcatcattcaaaatcatggact |
301 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||| |
|
|
| T |
31727204 |
attgtgacacaaatggtgaagaccaaggttgtgagggtggtcttatggatgatgcttttgaattcatcatccaaaataatggact |
31727288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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