View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8950_high_36 (Length: 258)
Name: NF8950_high_36
Description: NF8950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8950_high_36 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 26 - 249
Target Start/End: Complemental strand, 24505993 - 24505768
Alignment:
| Q |
26 |
tagaaaaaataatggatggtagtaaagtttccgtttaatacgttaagttagtgggtttgaagaaatttttagttttgttttatataatagatttttcgtg |
125 |
Q |
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| T |
24505993 |
tagaaaaaataatggatggtagtagagtttccgtttaatacgttgagttagtgggtttgaagaaatttt-agttttgttttatataatagatttttggtg |
24505895 |
T |
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| Q |
126 |
agttgggttccaaaaatagacttataccatattagattttttcccta---aaaagataaaaaataccatattagattttgtaattgatgtgaaaatatgc |
222 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||| |||| | |||||| |||||||||||||||||||||| ||||||||| ||| |
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| T |
24505894 |
agttgggttccaaaaatagacttacaccatattagattttttccctaaaaaaaaaaaaaaaaaaaccatattagattttgtaattggtgtgaaaatgtgc |
24505795 |
T |
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| Q |
223 |
acaataaaattgagaggctagtataat |
249 |
Q |
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|||| |||||||||||||||||||||| |
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| T |
24505794 |
acaagaaaattgagaggctagtataat |
24505768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 108
Target Start/End: Complemental strand, 24517125 - 24517042
Alignment:
| Q |
26 |
tagaaaaaataatggatggtag-taaagtttccgtttaatacgttaagttagtgggtttgaagaaatttttagttttgttttat |
108 |
Q |
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|||||||||||||||||||||| | | |||||| ||||||||| | |||| |||||||||||||| ||||||||||| |||||| |
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| T |
24517125 |
tagaaaaaataatggatggtagctgatgtttccatttaatacgatgagttggtgggtttgaagaattttttagttttattttat |
24517042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 103 - 165
Target Start/End: Complemental strand, 24516868 - 24516803
Alignment:
| Q |
103 |
ttttatataatagatttttcgtgagttgggttccaaaaatagactt---ataccatattagatttt |
165 |
Q |
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| T |
24516868 |
ttttatataatagatttttgatgagttgggtttcaaaaatagacttatcataccatattagatttt |
24516803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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