View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8950_high_39 (Length: 240)
Name: NF8950_high_39
Description: NF8950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8950_high_39 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 34 - 225
Target Start/End: Original strand, 24506028 - 24506219
Alignment:
| Q |
34 |
acaggttaaagcaatacacaccttattttgccaaattattaggagaaaaactaggtatgaccaataccaaataattttacacaacctttttaaatcagaa |
133 |
Q |
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| T |
24506028 |
acaggttaaagcaatacacaccttattttgccaaattattaggagaaaaactaggtaagatcaataacaaataattttacacaacctttttaaatcagaa |
24506127 |
T |
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| Q |
134 |
ataatttagtcctcttcttctaatcccacttttcttattacattcttaagcctttactctcaatctaaattcattcccaataaggatgatgt |
225 |
Q |
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| T |
24506128 |
atagtttagtcctcttcttctaatcccacttttcttattacattcttaagcctttactctcaatctaaattcattcccaataaggatgatgt |
24506219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 62 - 214
Target Start/End: Original strand, 24517207 - 24517341
Alignment:
| Q |
62 |
tgccaaattattaggagaaaaac-taggtatgaccaataccaaataattttacacaacctttttaaatcagaaataatttagtcctcttcttctaatccc |
160 |
Q |
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|||||||||| ||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||| | ||||||| |
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| T |
24517207 |
tgccaaattaataggagaaaaaaataggtaagaccaataacaaataattttacacaacctttttaaatcaga-------------------tataatccc |
24517287 |
T |
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| Q |
161 |
acttttcttattacattcttaagcctttactctcaatctaaattcattcccaat |
214 |
Q |
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| T |
24517288 |
actttacttattacattcttaatcctttactctcaatttaaattcattcccaat |
24517341 |
T |
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