View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8950_high_40 (Length: 239)
Name: NF8950_high_40
Description: NF8950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8950_high_40 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 22 - 239
Target Start/End: Complemental strand, 3572267 - 3572047
Alignment:
| Q |
22 |
tatggtgttatttatatgttgttttcaacaagataaattaaatgtccatatcttatgaaatctatgtatctaactttctattggttttgaacattacagt |
121 |
Q |
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| T |
3572267 |
tatggtgttatttatatgttgttttcaacaagataaattaaatgtccatatcttatgaaatctatgtatctaactttctattggttttgagcattacagt |
3572168 |
T |
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| Q |
122 |
tgcttctcaaaccacataccactctataaattattttcttcctttcccaaacatatcaaatatccac---attttaaaataatatcattaaatatctttt |
218 |
Q |
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|||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||| | | || ||||||||||||||||||||||| |
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| T |
3572167 |
tgcttctcaaaccacatatcactttaaaaattattttcttcctttcccaaacatatcaaatatccacaataatatataataatatcattaaatatctttt |
3572068 |
T |
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| Q |
219 |
tcatccaatgagagtttgcca |
239 |
Q |
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| T |
3572067 |
tcatccaataagagtttgcca |
3572047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 139
Target Start/End: Complemental strand, 3575500 - 3575427
Alignment:
| Q |
65 |
gtccatatcttatgaaatctatgtatctaactttctattggttttgaacattacagttgcttctcaaaccacata |
139 |
Q |
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|||||||||||||||||||||| | | | | ||||||||||||| || ||||||| || | |||||||||||||| |
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| T |
3575500 |
gtccatatcttatgaaatctatatct-tgattttctattggtttggagcattacacttacatctcaaaccacata |
3575427 |
T |
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