View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8950_high_49 (Length: 211)

Name: NF8950_high_49
Description: NF8950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8950_high_49
NF8950_high_49
[»] chr7 (16 HSPs)
chr7 (92-187)||(11721427-11721522)
chr7 (25-92)||(41670758-41670825)
chr7 (25-91)||(257414-257480)
chr7 (25-91)||(43168040-43168106)
chr7 (31-92)||(30296519-30296580)
chr7 (25-93)||(1661338-1661406)
chr7 (28-91)||(28909923-28909986)
chr7 (25-91)||(1663751-1663817)
chr7 (19-92)||(40121759-40121832)
chr7 (19-91)||(40122067-40122139)
chr7 (25-91)||(7135390-7135456)
chr7 (25-91)||(41670475-41670541)
chr7 (25-89)||(29780352-29780416)
chr7 (34-91)||(37272176-37272232)
chr7 (55-91)||(21033986-21034022)
chr7 (47-91)||(41709910-41709954)
[»] chr4 (27 HSPs)
chr4 (25-91)||(29734452-29734518)
chr4 (19-92)||(990731-990804)
chr4 (19-91)||(52214506-52214578)
chr4 (19-92)||(990929-991001)
chr4 (19-92)||(50858218-50858291)
chr4 (19-92)||(53740072-53740145)
chr4 (19-91)||(50857903-50857975)
chr4 (19-91)||(53739748-53739820)
chr4 (33-92)||(15665042-15665101)
chr4 (25-91)||(17222783-17222849)
chr4 (25-91)||(45427399-45427465)
chr4 (31-92)||(45427089-45427150)
chr4 (25-93)||(29669824-29669892)
chr4 (25-93)||(32988417-32988485)
chr4 (25-92)||(23018360-23018427)
chr4 (25-92)||(29669509-29669576)
chr4 (25-92)||(53738355-53738422)
chr4 (25-91)||(51469377-51469443)
chr4 (25-91)||(22866975-22867041)
chr4 (25-91)||(36558613-36558679)
chr4 (25-91)||(48843164-48843230)
chr4 (35-92)||(18862547-18862604)
chr4 (25-88)||(43971933-43971996)
chr4 (25-92)||(43972245-43972312)
chr4 (25-91)||(13254295-13254361)
chr4 (25-94)||(49544223-49544290)
chr4 (25-86)||(56509504-56509566)
[»] chr2 (21 HSPs)
chr2 (19-92)||(21214026-21214099)
chr2 (19-100)||(6183514-6183595)
chr2 (19-92)||(43195674-43195747)
chr2 (19-91)||(21214342-21214414)
chr2 (31-91)||(30166232-30166292)
chr2 (19-91)||(43169133-43169205)
chr2 (25-91)||(42768479-42768545)
chr2 (25-83)||(18902011-18902069)
chr2 (19-92)||(3976296-3976369)
chr2 (19-91)||(3977144-3977216)
chr2 (25-91)||(7877735-7877801)
chr2 (25-91)||(17509000-17509066)
chr2 (25-91)||(25441587-25441653)
chr2 (19-92)||(3976828-3976901)
chr2 (25-89)||(11968947-11969011)
chr2 (28-91)||(10849641-10849704)
chr2 (25-91)||(5424903-5424969)
chr2 (36-92)||(3976628-3976684)
chr2 (31-91)||(23054217-23054277)
chr2 (56-91)||(35872804-35872839)
chr2 (25-75)||(15820248-15820298)
[»] chr6 (17 HSPs)
chr6 (25-92)||(19753751-19753818)
chr6 (31-91)||(1408902-1408962)
chr6 (25-93)||(24055256-24055324)
chr6 (25-92)||(21067204-21067271)
chr6 (25-91)||(10733585-10733651)
chr6 (25-91)||(12134630-12134696)
chr6 (25-91)||(30539126-30539192)
chr6 (25-89)||(22911321-22911385)
chr6 (25-92)||(8143908-8143975)
chr6 (25-92)||(21088995-21089062)
chr6 (25-91)||(1744989-1745055)
chr6 (25-91)||(10418485-10418551)
chr6 (25-86)||(28068565-28068626)
chr6 (25-89)||(21043928-21043992)
chr6 (25-89)||(22889715-22889779)
chr6 (25-91)||(19054384-19054450)
chr6 (25-92)||(22874990-22875057)
[»] chr8 (13 HSPs)
chr8 (25-91)||(32931297-32931363)
chr8 (19-91)||(18905747-18905819)
chr8 (19-91)||(36997057-36997129)
chr8 (25-91)||(3184050-3184116)
chr8 (25-91)||(31766892-31766958)
chr8 (19-91)||(21653217-21653289)
chr8 (25-91)||(23027975-23028041)
chr8 (25-92)||(23027652-23027719)
chr8 (25-88)||(40754338-40754401)
chr8 (25-91)||(20298663-20298729)
chr8 (25-91)||(21085295-21085361)
chr8 (25-91)||(22277415-22277481)
chr8 (19-86)||(21653700-21653766)
[»] chr3 (23 HSPs)
chr3 (25-91)||(45443171-45443237)
chr3 (25-91)||(54368930-54368996)
chr3 (31-91)||(27219220-27219280)
chr3 (25-91)||(4255401-4255467)
chr3 (25-91)||(24860207-24860273)
chr3 (19-92)||(44573532-44573605)
chr3 (19-92)||(44573845-44573918)
chr3 (25-92)||(4256124-4256191)
chr3 (25-92)||(13769438-13769505)
chr3 (25-91)||(34715602-34715668)
chr3 (25-91)||(41380615-41380681)
chr3 (25-91)||(43101518-43101584)
chr3 (25-91)||(3985618-3985684)
chr3 (19-92)||(44573216-44573289)
chr3 (44-92)||(4255760-4255808)
chr3 (31-91)||(48685471-48685531)
chr3 (44-92)||(4255942-4255990)
chr3 (31-89)||(9658193-9658251)
chr3 (25-91)||(14170146-14170212)
chr3 (25-91)||(50204004-50204066)
chr3 (25-91)||(662619-662683)
chr3 (25-91)||(34250499-34250564)
chr3 (47-91)||(31606343-31606387)
[»] chr1 (16 HSPs)
chr1 (25-91)||(35926368-35926434)
chr1 (19-92)||(19937184-19937257)
chr1 (19-91)||(17419678-17419750)
chr1 (25-92)||(31305601-31305668)
chr1 (25-91)||(8520382-8520448)
chr1 (25-91)||(20735413-20735479)
chr1 (25-92)||(45264553-45264620)
chr1 (25-91)||(4022272-4022338)
chr1 (25-91)||(33879925-33879991)
chr1 (25-91)||(33964264-33964330)
chr1 (34-91)||(15013416-15013473)
chr1 (42-91)||(43423193-43423242)
chr1 (29-93)||(2697482-2697546)
chr1 (55-93)||(37600786-37600824)
chr1 (25-84)||(8520240-8520299)
chr1 (47-88)||(19810865-19810906)
[»] chr5 (18 HSPs)
chr5 (19-92)||(13843903-13843976)
chr5 (19-91)||(13843588-13843660)
chr5 (31-90)||(27759967-27760026)
chr5 (25-92)||(27760281-27760348)
chr5 (25-96)||(37995781-37995852)
chr5 (25-91)||(12595250-12595316)
chr5 (19-85)||(20837706-20837772)
chr5 (19-85)||(20811351-20811417)
chr5 (25-98)||(873843-873915)
chr5 (25-92)||(17016240-17016305)
chr5 (26-92)||(1028241-1028306)
chr5 (25-91)||(24918055-24918121)
chr5 (25-91)||(28010263-28010329)
chr5 (25-91)||(24993963-24994029)
chr5 (25-91)||(38131658-38131724)
chr5 (25-92)||(28009944-28010011)
chr5 (57-91)||(30588224-30588258)
chr5 (56-92)||(904935-904971)
[»] scaffold0054 (1 HSPs)
scaffold0054 (25-89)||(11174-11238)


Alignment Details
Target: chr7 (Bit Score: 84; Significance: 4e-40; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 92 - 187
Target Start/End: Original strand, 11721427 - 11721522
Alignment:
Q  92 ctatgtaatgtaagtgttaaaataaagagatgtaagagaacttaccaaagataaattgatctaaactcttgttgggtaattactcatatacaagta 187  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  11721427 ctatgtaatgtaagtgttaagataaagagatgtaagagaacttaccaaagataaattgatctaaactcttgttgggtaagtgctcatatacaagta 11721522  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 41670825 - 41670758
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacac 92  Q
    ||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  41670825 aaggctaaccaaaggtcgcaatttaggcaactaggggcggactgcaattaaggcggaatttccaacac 41670758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 257414 - 257480
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  257414 aaggctaaccaaaggtcgcaatttaggcgactaggggcggaccgcaattaaggcggaatttccaaca 257480  T

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Target: chr7; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 43168040 - 43168106
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  43168040 aaggctaaccaaaggtcgcaatttaggcgactaggggcggaccgcaattaaggcggaatttccaaca 43168106  T

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Target: chr7; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 30296580 - 30296519
Alignment:
Q  31 aaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacac 92  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  30296580 aaccaaaggtcgcaatttaggcgactaggggcggatcacaattaaggcggaatttccaacac 30296519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 1661338 - 1661406
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacact 93  Q
    ||||| ||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||    
T  1661338 aaggctaaccaaaggtcgcaatttaggcaactaggggcgaaccgcgattaaggcggaatttccaacact 1661406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 28909986 - 28909923
Alignment:
Q  28 gcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    |||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  28909986 gcaaaccaaagggcgcaatttaggcgactaggggcggaccacaataaaggcggaatttccaaca 28909923  T

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Target: chr7; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 1663751 - 1663817
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||| ||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  1663751 aaggctaaccaaaggccgcaattaaggcaactaggggcggaccgcaattaaggcggaatttccaaca 1663817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 40121759 - 40121832
Alignment:
Q  19 gcaagtaaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacac 92  Q
    |||| |||||| |||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  40121759 gcaattaaggctaaccgaaggtagcaatttaggcgactaggggcggaccgcaattaaggcggaatttccaacac 40121832  T

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Target: chr7; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 40122067 - 40122139
Alignment:
Q  19 gcaagtaaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    |||| |||||| |||| ||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||    
T  40122067 gcaattaaggctaaccgaaggtcgcaatttaggcgactaggggtggaccgcaattaaggcggaatttccaaca 40122139  T

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Target: chr7; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 7135390 - 7135456
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||| |||||||||||||||||||||  |||||||||||||| ||||||| |||||||||||||||    
T  7135390 aaggctaaccaaaggtcgcaatttaggtgactaggggcggaccgcaattaaagcggaatttccaaca 7135456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 41670541 - 41670475
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||| ||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||| ||||    
T  41670541 aaggctaaccaaaggtcgcaaattaggcgactaggggcggaccaaaattaaggcggaatttcaaaca 41670475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 29780416 - 29780352
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaa 89  Q
    ||||||||| ||| | |||||||||||| |||||||||||||| |||| |||| |||||||||||    
T  29780416 aaggcaaactaaaagccgcaatttaggcgactaggggcggaccgcaataaaggtggaatttccaa 29780352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 37272176 - 37272232
Alignment:
Q  34 caaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    |||| ||||||||| |||| |||||||| ||||| |||| ||||||||||||||||||    
T  37272176 caaatgtcgcaatt-aggcgactaggggtggaccgcaataaaggcggaatttccaaca 37272232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 91
Target Start/End: Original strand, 21033986 - 21034022
Alignment:
Q  55 ctaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  21033986 ctaggggcggaccgcaatgaaggcggaatttccaaca 21034022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 41709954 - 41709910
Alignment:
Q  47 ttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    |||||| |||||||||  |||||||| ||||||||||||||||||    
T  41709954 ttaggcgactaggggcaaaccacaataaaggcggaatttccaaca 41709910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 3e-25; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 29734518 - 29734452
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29734518 aaggctaaccaaaggtcgcaatttaggcgactaggggcggaccacaattaaggcggaatttccaaca 29734452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 990804 - 990731
Alignment:
Q  19 gcaagtaaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacac 92  Q
    |||| |||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  990804 gcaattaaggctaaccaaaggtcgcaatttaggcgactaggggcggaccgcaattaaggcggaatttccaacac 990731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 52214578 - 52214506
Alignment:
Q  19 gcaagtaaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    |||| |||||| ||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||    
T  52214578 gcaattaaggctaaccaaaggtctcaatttaggcgactaggggcggaccgcaattaaggcggaatttccaaca 52214506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 991001 - 990929
Alignment:
Q  19 gcaagtaaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacac 92  Q
    |||| |||||| |||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||    
T  991001 gcaattaaggctaaccaaaggtcgcaatttaggcgactaggggcggaccgcaattaaggc-gaatttccaacac 990929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 50858291 - 50858218
Alignment:
Q  19 gcaagtaaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacac 92  Q
    |||| |||||| |||| ||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||    
T  50858291 gcaattaaggctaaccgaaggtcgcaatttaggcgactaggggtggaccgcaattaaggcggaatttccaacac 50858218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 53740145 - 53740072
Alignment:
Q  19 gcaagtaaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacac 92  Q
    |||| |||||| |||| |||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  53740145 gcaattaaggctaaccgaaggtcacaatttaggcgactaggggcggaccgcaattaaggcggaatttccaacac 53740072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 50857975 - 50857903
Alignment:
Q  19 gcaagtaaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    |||| |||||| |||| ||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||    
T  50857975 gcaattaaggctaaccgaaggtcgcaatttaggcgactaggggtggaccgcaattaaggcggaatttccaaca 50857903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 53739820 - 53739748
Alignment:
Q  19 gcaagtaaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    |||| |||||| |||| ||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||    
T  53739820 gcaattaaggctaaccgaaggtcgcaatttaggcgactaggggcggaccgcaattaaggcagaatttccaaca 53739748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 15665101 - 15665042
Alignment:
Q  33 ccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacac 92  Q
    |||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||    
T  15665101 ccaaaggtcgcaatttaggcgactgggggcggaccgcaattaaggcggaatttccaacac 15665042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 17222783 - 17222849
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||| |||||||||||||||||||||| ||||| |||||||| ||||||||| |||||||||||||    
T  17222783 aaggctaaccaaaggtcgcaatttaggcgactagaggcggaccgcaattaaggtggaatttccaaca 17222849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 45427399 - 45427465
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||| |||| ||||||||||||||||| |||||||||||||| || ||||||||||||||||||||    
T  45427399 aaggctaacccaaggtcgcaatttaggcgactaggggcggaccgcagttaaggcggaatttccaaca 45427465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 45427089 - 45427150
Alignment:
Q  31 aaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacac 92  Q
    |||| ||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||    
T  45427089 aacccaaggtcgcaatttaggcgactaggggcggacagcaattaaggcggaatttccaacac 45427150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 29669824 - 29669892
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacact 93  Q
    ||||| ||||||||| ||||||| |||| |||||||| ||||| |||||||||||||||||||||||||    
T  29669824 aaggctaaccaaaggccgcaattaaggcgactaggggtggaccgcaattaaggcggaatttccaacact 29669892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 32988417 - 32988485
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacact 93  Q
    ||||| ||||||| |||||||||||||  ||||| |||||||| |||||||||||||||||||||||||    
T  32988417 aaggctaaccaaaagtcgcaatttaggtgactagcggcggaccgcaattaaggcggaatttccaacact 32988485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 23018427 - 23018360
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacac 92  Q
    ||||| |||||||||||||||||||||| ||||||| |||||| |||| ||||||||||| |||||||    
T  23018427 aaggctaaccaaaggtcgcaatttaggcgactagggacggaccgcaatgaaggcggaattaccaacac 23018360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 29669509 - 29669576
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacac 92  Q
    ||||| |||||||||  |||||| |||| |||||||||||||| ||||||||||||||||||||||||    
T  29669509 aaggctaaccaaaggcagcaattaaggcgactaggggcggaccgcaattaaggcggaatttccaacac 29669576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 53738355 - 53738422
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacac 92  Q
    ||||||||||||||| |||||||||||| |||||||| ||||| |||| ||||||||||| |||||||    
T  53738355 aaggcaaaccaaaggccgcaatttaggcgactaggggtggaccgcaataaaggcggaattaccaacac 53738422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 51469443 - 51469377
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    |||||||||| || | |||||||||||| |||||||||||||| |||| ||||||||||||||||||    
T  51469443 aaggcaaacccaaaggcgcaatttaggcgactaggggcggaccgcaataaaggcggaatttccaaca 51469377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 22867041 - 22866975
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||||||| ||||| ||||||| |||| ||||||||| ||||||||| ||||||||||||| ||||    
T  22867041 aaggcaaactaaaggccgcaattaaggcgactaggggcagaccacaataaaggcggaatttctaaca 22866975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 36558613 - 36558679
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||||||||||||| ||||||| |||  |||||||||||||  |||||||||| ||||||||||||    
T  36558613 aaggcaaaccaaaggccgcaattaaggtgactaggggcggactgcaattaaggcagaatttccaaca 36558679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 48843164 - 48843230
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    |||| ||| |||||| |||||||||||| |||||||| ||||| |||| ||||||||||||||||||    
T  48843164 aaggaaaatcaaaggccgcaatttaggcgactaggggtggaccgcaataaaggcggaatttccaaca 48843230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 18862604 - 18862547
Alignment:
Q  35 aaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacac 92  Q
    |||||| ||||||||||| ||||| |||||||| | ||||||||||||||||||||||    
T  18862604 aaaggttgcaatttaggcgactagaggcggaccgcgattaaggcggaatttccaacac 18862547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 43971996 - 43971933
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttcca 88  Q
    |||| ||||||||||||| |||||||||| |||||||| |||| |||| |||| ||||||||||    
T  43971996 aaggtaaaccaaaggtcgtaatttaggcagctaggggcagaccgcaatgaaggtggaatttcca 43971933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 43972312 - 43972245
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacac 92  Q
    |||||||| |||||| |||||||||||| ||| ||||| |||| |||| |||| ||||||||||||||    
T  43972312 aaggcaaatcaaaggccgcaatttaggcgactgggggcagaccgcaatgaaggtggaatttccaacac 43972245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 13254361 - 13254295
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||||||| |||||  ||| ||||||| ||||||||| |||| |||| ||||||||||||||||||    
T  13254361 aaggcaaacaaaaggctgcagtttaggcgactaggggcagaccgcaataaaggcggaatttccaaca 13254295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 49544290 - 49544223
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacacta 94  Q
    ||||| ||||||||| ||||||| |||| ||||||||  ||||||||| ||| |||||||||||||||||    
T  49544290 aaggctaaccaaaggccgcaattaaggcgactagggg--gaccacaataaagacggaatttccaacacta 49544223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 56509566 - 56509504
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggca-actaggggcggaccacaattaaggcggaatttc 86  Q
    ||||||||||||||| ||| ||||||||  |||||||||||||| |||| |||| ||||||||    
T  56509566 aaggcaaaccaaaggccgcgatttaggcggactaggggcggaccgcaataaaggtggaatttc 56509504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 1e-24; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 21214026 - 21214099
Alignment:
Q  19 gcaagtaaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacac 92  Q
    |||| |||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  21214026 gcaattaaggctaaccaaagatcgcaatttaggcgactaggggcggaccacaattaaggcggaatttccaacac 21214099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 6183514 - 6183595
Alignment:
Q  19 gcaagtaaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacactatgtaat 100  Q
    |||| |||||| |||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| || |||||    
T  6183514 gcaattaaggctaaccgaaggtcgcaatttaggcgactagggacggaccacaattaaggcggaatttccaacattaagtaat 6183595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 43195747 - 43195674
Alignment:
Q  19 gcaagtaaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacac 92  Q
    |||| |||||| |||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  43195747 gcaattaaggctaaccgaaggtcgcaatttaggcgactaggggcggaccgcaattaaggcggaatttccaacac 43195674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 21214342 - 21214414
Alignment:
Q  19 gcaagtaaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    |||| |||||| ||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||    
T  21214342 gcaattaaggctaaccaaaggtcacaatttaggcgactaggggcggaccgcaattaaggcggaatttccaaca 21214414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 30166232 - 30166292
Alignment:
Q  31 aaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  30166232 aaccaaaggtcgcaattaaggcgactaggggcggaccacaattaaggcggaatttccaaca 30166292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 43169205 - 43169133
Alignment:
Q  19 gcaagtaaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    |||| |||||| |||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  43169205 gcaattaaggctaaccgaaggtcgcaatttaggcgactaggggcggaccgcaattaaggcggaatttccaaca 43169133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 42768479 - 42768545
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||| |||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||    
T  42768479 aaggctaaccaaaggtcgcaatttaggcgactaggggcgaaccgcaattaaggcggaatttccaaca 42768545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 18902011 - 18902069
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaat 83  Q
    ||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  18902011 aaggctaaccaaagatcgcaatttaggcgactaggggcggaccacaattaaggcggaat 18902069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 3976296 - 3976369
Alignment:
Q  19 gcaagtaaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacac 92  Q
    |||| |||||| |||  ||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||    
T  3976296 gcaattaaggctaactgaaggtcgcaatttaggcgactaggggcggaccacaattaaggtgaaatttccaacac 3976369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 3977144 - 3977216
Alignment:
Q  19 gcaagtaaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    |||| |||||| |||| ||||  ||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  3977144 gcaattaaggctaaccgaaggatgcaatttaggcgactaggggcggaccgcaattaaggcggaatttccaaca 3977216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 7877801 - 7877735
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||| |||| ||||||||||||||||| ||||||| |||||| ||||||| |||||||||||||||    
T  7877801 aaggctaaccgaaggtcgcaatttaggcgactagggacggaccgcaattaaagcggaatttccaaca 7877735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 17509066 - 17509000
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||| ||||||||||||||||| |||| || ||||||||||  |||||||||||||||||||||||    
T  17509066 aaggctaaccaaaggtcgcaattaaggcgacgaggggcggactgcaattaaggcggaatttccaaca 17509000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 25441653 - 25441587
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||| ||||||||| |||||||||||| |||||||||||||| |||| |||| |||||||||||||    
T  25441653 aaggctaaccaaaggccgcaatttaggcgactaggggcggaccgcaataaaggtggaatttccaaca 25441587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 3976828 - 3976901
Alignment:
Q  19 gcaagtaaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacac 92  Q
    |||| |||||| |||| ||||||||||| ||||| |||||||||||| | ||||||| ||||||||||||||||    
T  3976828 gcaattaaggctaaccgaaggtcgcaatgtaggcgactaggggcggatcgcaattaaagcggaatttccaacac 3976901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 11969011 - 11968947
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaa 89  Q
    ||||| |||| |||||| |||||||||| |||||||||||||  |||||||||||||||||||||    
T  11969011 aaggctaacccaaggtcacaatttaggcgactaggggcggactgcaattaaggcggaatttccaa 11968947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 10849641 - 10849704
Alignment:
Q  28 gcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||| |||| | ||||||| ||||||||||||||||||| |||| ||||||||||||||||||    
T  10849641 gcaaatcaaaagccgcaattaaggcaactaggggcggaccgcaataaaggcggaatttccaaca 10849704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 5424903 - 5424969
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    |||| |||||||||| |||||||||||| |||||||  ||||  ||||||||| |||||||||||||    
T  5424903 aaggaaaaccaaaggccgcaatttaggcgactagggaaggacagcaattaaggtggaatttccaaca 5424969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 3976628 - 3976684
Alignment:
Q  36 aaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacac 92  Q
    ||||||||||||||||| | |||||| ||||| | ||||||| ||||||||||||||    
T  3976628 aaggtcgcaatttaggcgattaggggtggaccgcgattaaggtggaatttccaacac 3976684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 23054277 - 23054217
Alignment:
Q  31 aaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    |||||||||||||||||||| | |||  |||| |||| ||||||||| |||||||||||||    
T  23054277 aaccaaaggtcgcaatttagacgactccgggcagaccgcaattaaggtggaatttccaaca 23054217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 91
Target Start/End: Complemental strand, 35872839 - 35872804
Alignment:
Q  56 taggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||||||||||||||| ||||||||||||||||||    
T  35872839 taggggcggaccacaatgaaggcggaatttccaaca 35872804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 15820248 - 15820298
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaa 75  Q
    ||||||||||||||| ||||||| |||||||  |||||||||| |||||||    
T  15820248 aaggcaaaccaaaggccgcaattaaggcaaccgggggcggaccgcaattaa 15820298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 19753751 - 19753818
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacac 92  Q
    ||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  19753751 aaggctaaccaaaggtcgcaatttaggcaactaggggcagaccgcaattaaggcggaatttccaacac 19753818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 1408962 - 1408902
Alignment:
Q  31 aaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    |||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||    
T  1408962 aaccaaaggtcgcaatttaggcgacaaggggcggaccgcaattaaggcggaatttccaaca 1408902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 24055256 - 24055324
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacact 93  Q
    ||||| ||||||||| |||||||||||| |||||||||||||| |||||||||| ||||||||||||||    
T  24055256 aaggctaaccaaagggcgcaatttaggcgactaggggcggaccgcaattaaggcagaatttccaacact 24055324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 21067204 - 21067271
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacac 92  Q
    ||||| ||||||||||| ||||||| || |||||||||||||| ||||||||||||||||||||||||    
T  21067204 aaggctaaccaaaggtcacaatttatgcgactaggggcggaccgcaattaaggcggaatttccaacac 21067271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 10733585 - 10733651
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||| |||||||||||||||||||||| ||||||| |||||  |||||||||||||||||||||||    
T  10733585 aaggctaaccaaaggtcgcaatttaggcgactagggacggactgcaattaaggcggaatttccaaca 10733651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 12134630 - 12134696
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||||||||||||| |||||||||||  ||||||||||||||| ||| ||||||||||||||||||    
T  12134630 aaggcaaaccaaaggccgcaatttaggtgactaggggcggaccagaataaaggcggaatttccaaca 12134696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 30539192 - 30539126
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    |||||||||||||||  ||||||||||| |||||||||||||| |||| ||||||||||||||||||    
T  30539192 aaggcaaaccaaaggctgcaatttaggcgactaggggcggaccgcaataaaggcggaatttccaaca 30539126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 22911321 - 22911385
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaa 89  Q
    |||||||||||||||||||||||||||| ||||||||||||||  ||| |||| |||||||||||    
T  22911321 aaggcaaaccaaaggtcgcaatttaggcgactaggggcggaccgtaataaaggtggaatttccaa 22911385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 8143975 - 8143908
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacac 92  Q
    ||||| ||||||||| ||||||| |||| ||||||||| |||| ||||||||||||||||||||||||    
T  8143975 aaggctaaccaaaggccgcaattaaggcgactaggggcagaccgcaattaaggcggaatttccaacac 8143908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 21088995 - 21089062
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacac 92  Q
    ||||| ||||||||||| ||||| |||| |||||||||||||| |||||||||| |||||||||||||    
T  21088995 aaggctaaccaaaggtcacaattaaggcgactaggggcggaccgcaattaaggcagaatttccaacac 21089062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 1744989 - 1745055
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||| |||||||||||||||||||||| ||| | |||||||| | |||||||||||||||||||||    
T  1744989 aaggctaaccaaaggtcgcaatttaggcgactggaggcggaccgcgattaaggcggaatttccaaca 1745055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 10418485 - 10418551
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||| |||||||| |||||||| |||| |||||||||||||| |||||||||||||| ||||||||    
T  10418485 aaggctaaccaaagatcgcaattaaggcgactaggggcggaccgcaattaaggcggaaattccaaca 10418551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 28068565 - 28068626
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttc 86  Q
    ||||| ||||||||||| |||||||||| |||||||||||||| || |||||||||||||||    
T  28068565 aaggctaaccaaaggtcacaatttaggcgactaggggcggaccgcatttaaggcggaatttc 28068626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 21043928 - 21043992
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaa 89  Q
    ||||| ||||||||||| ||||||| || |||||||||||||| |||||||||| ||||||||||    
T  21043928 aaggctaaccaaaggtcacaatttatgcgactaggggcggaccgcaattaaggcagaatttccaa 21043992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 22889715 - 22889779
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaa 89  Q
    |||||||||||||||||||||||||||| |||||||||| |||  ||| |||| |||||||||||    
T  22889715 aaggcaaaccaaaggtcgcaatttaggcgactaggggcgaaccgtaataaaggtggaatttccaa 22889779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 19054450 - 19054384
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||| ||||||||||||||||| |||| ||||||||| || | ||||||||||||||||| |||||    
T  19054450 aaggctaaccaaaggtcgcaattaaggcgactaggggctgatcgcaattaaggcggaattttcaaca 19054384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 22874990 - 22875057
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacac 92  Q
    |||||||||||||||||||||||||||| ||||||||| | ||  ||| |||| | ||||||||||||    
T  22874990 aaggcaaaccaaaggtcgcaatttaggcgactaggggcaggccgtaataaaggtgaaatttccaacac 22875057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 32931363 - 32931297
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  32931363 aaggctaaccaaaggtcgcaatttaggcgactaggggcggaccgcaattaaggcggaatttccaaca 32931297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 18905819 - 18905747
Alignment:
Q  19 gcaagtaaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    |||| |||||| ||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||    
T  18905819 gcaattaaggctaaccaaaggtcgcaaattaggcgactaggggcggaccgcaattaaggcggaatttccaaca 18905747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 36997129 - 36997057
Alignment:
Q  19 gcaagtaaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    |||| |||||| ||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||    
T  36997129 gcaattaaggctaaccaaaggtcacaatttaggcgactaggggcggaccgcaattaaggcggaatttccaaca 36997057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 3184050 - 3184116
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||||||||||||| |||||||||||| |||||||||||||| |||| |||||||||||| |||||    
T  3184050 aaggcaaaccaaaggccgcaatttaggcgactaggggcggaccgcaataaaggcggaatttacaaca 3184116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 31766958 - 31766892
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||||||||||||| |||||||||||  |||||||||||||| |||| ||||||||||||||||||    
T  31766958 aaggcaaaccaaaggccgcaatttaggtgactaggggcggaccgcaatgaaggcggaatttccaaca 31766892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 21653289 - 21653217
Alignment:
Q  19 gcaagtaaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    |||| |||||| |||| ||  ||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  21653289 gcaattaaggctaaccgaaaatcgcaatttaggcgactaggggcggaccgcaattaaggcggaatttccaaca 21653217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 23027975 - 23028041
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||||| ||||||| |||||||||||  ||||||||| |||| |||| ||||||||||||||||||    
T  23027975 aaggcaagccaaaggccgcaatttaggtgactaggggcagaccgcaataaaggcggaatttccaaca 23028041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 23027652 - 23027719
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacac 92  Q
    ||||||| ||||| |  ||||||||||| |||||||||||||  |||| |||||||||||||||||||    
T  23027652 aaggcaagccaaatgctgcaatttaggcgactaggggcggactgcaatgaaggcggaatttccaacac 23027719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 40754401 - 40754338
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttcca 88  Q
    |||||||||| |||| | |||||||||| |||||||||||||| |||| |||||||| ||||||    
T  40754401 aaggcaaacctaaggccccaatttaggcgactaggggcggaccgcaataaaggcggattttcca 40754338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 20298663 - 20298729
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||| |||||||||| |||||| | || ||  |||||||||| |||||||||||||||||||||||    
T  20298663 aaggctaaccaaaggttgcaattgacgcgacagggggcggaccgcaattaaggcggaatttccaaca 20298729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 21085295 - 21085361
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||| |||||||||| |||||| | || ||  |||||||||| |||||||||||||||||||||||    
T  21085295 aaggctaaccaaaggttgcaattgacgcgacagggggcggaccgcaattaaggcggaatttccaaca 21085361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 22277481 - 22277415
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||||||| |||||  ||||||||||| |||||||||||||| |||| ||| |||||||| |||||    
T  22277481 aaggcaaactaaaggctgcaatttaggcgactaggggcggaccgcaataaagacggaattttcaaca 22277415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 21653766 - 21653700
Alignment:
Q  19 gcaagtaaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttc 86  Q
    |||| |||||| |||| ||| ||||||||||||| |||||||| ||||  ||||||||||||||||||    
T  21653766 gcaattaaggctaaccgaagatcgcaatttaggcgactagggg-ggactgcaattaaggcggaatttc 21653700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 9e-23; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 45443237 - 45443171
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  45443237 aaggctaaccaaaggtcgcaatttaggcgactaggggcggaccgcaattaaggcggaatttccaaca 45443171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 54368996 - 54368930
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  54368996 aaggctaaccaaaggtcgcaatttaggcgactaggggcggaccgcaattaaggcggaatttccaaca 54368930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 27219280 - 27219220
Alignment:
Q  31 aaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  27219280 aaccaaaggtcgcaatttaggcgactaggggcggaccgcaattaaggcggaatttccaaca 27219220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 4255467 - 4255401
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||| ||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||    
T  4255467 aaggctaaccaaaggtcccaatttaggcgactaggggcggaccgcaattaaggcggaatttccaaca 4255401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 24860207 - 24860273
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||| ||||| ||||||||||||    
T  24860207 aaggcaaaccaaaggccgcaatttaggcaactaggggcggaccgcaataaaggcagaatttccaaca 24860273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 44573605 - 44573532
Alignment:
Q  19 gcaagtaaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacac 92  Q
    |||| |||||| |||| ||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||    
T  44573605 gcaattaaggctaaccgaaggtcgcaatttaggcgactaggggcggaccgcaattaaggcggaatctccaacac 44573532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 44573918 - 44573845
Alignment:
Q  19 gcaagtaaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacac 92  Q
    |||| |||||| |||| ||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||    
T  44573918 gcaattaaggctaaccgaaggtcgcaatttaggcgactaggggcggaccgcaattaaggcggaatttctaacac 44573845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 4256191 - 4256124
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacac 92  Q
    ||||| |||||||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||||||    
T  4256191 aaggctaaccaaaggttgcaatttaggcgactagggggggaccgcaattaaggcggaatttccaacac 4256124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 13769438 - 13769505
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacac 92  Q
    ||||| |||||||||| ||||||||||| |||||||||||||| ||||||| ||||||||||||||||    
T  13769438 aaggctaaccaaaggttgcaatttaggcgactaggggcggaccgcaattaaagcggaatttccaacac 13769505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 34715602 - 34715668
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||| |||||||||||||||||||||| |||||||||||| | |||||||||||||||||| ||||    
T  34715602 aaggctaaccaaaggtcgcaatttaggcgactaggggcggaacgcaattaaggcggaatttcaaaca 34715668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 41380681 - 41380615
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||| ||||||||||||||||| |||| ||||||||||| || |||||||||||||||||||||||    
T  41380681 aaggctaaccaaaggtcgcaattaaggcgactaggggcgggccgcaattaaggcggaatttccaaca 41380615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 43101518 - 43101584
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||| |||||||||||||||||||||| ||||||| |||||| |||||||||| ||||||||||||    
T  43101518 aaggccaaccaaaggtcgcaatttaggcgactagggacggacctcaattaaggcagaatttccaaca 43101584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 3985684 - 3985618
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||||||||||||| ||||||| |||| |||||||||||||  |||||||||| ||||||||||||    
T  3985684 aaggcaaaccaaaggccgcaattaaggcgactaggggcggactgcaattaaggcagaatttccaaca 3985618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 44573289 - 44573216
Alignment:
Q  19 gcaagtaaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacac 92  Q
    |||| |||||| |||| ||||||||||||||||| ||| |||||||| | ||| ||||||||||||||||||||    
T  44573289 gcaattaaggctaaccgaaggtcgcaatttaggcgactgggggcggatcgcaactaaggcggaatttccaacac 44573216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 4255808 - 4255760
Alignment:
Q  44 aatttaggcaactaggggcggaccacaattaaggcggaatttccaacac 92  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  4255808 aatttaggcgactaggggcggaccgcaattaaggcggaatttccaacac 4255760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 48685471 - 48685531
Alignment:
Q  31 aaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||||||||| |||||||||| ||||| |||||||| |||||||||| ||||||||||||    
T  48685471 aaccaaaggtcacaatttaggcgactagaggcggaccgcaattaaggcagaatttccaaca 48685531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 4255990 - 4255942
Alignment:
Q  44 aatttaggcaactaggggcggaccacaattaaggcggaatttccaacac 92  Q
    ||||||||| |||||||||||||| |||||||||||||||| |||||||    
T  4255990 aatttaggcgactaggggcggaccgcaattaaggcggaattcccaacac 4255942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 31 - 89
Target Start/End: Complemental strand, 9658251 - 9658193
Alignment:
Q  31 aaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaa 89  Q
    |||||||||  ||||||||||| ||||||||| |||  |||||||||||||||||||||    
T  9658251 aaccaaaggctgcaatttaggcgactaggggctgacagcaattaaggcggaatttccaa 9658193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 14170146 - 14170212
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||||||||||| | ||||||||||||  |||||||||| || |||| ||||||||| ||||||||    
T  14170146 aaggcaaaccaaatgccgcaatttaggcggctaggggcgggccgcaataaaggcggaacttccaaca 14170212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 50204004 - 50204066
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||| ||||||||||| |||||||||| |||||||||||||| |    ||||||||||||||||||    
T  50204004 aaggctaaccaaaggtcacaatttaggcgactaggggcggaccgc----aaggcggaatttccaaca 50204066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 662683 - 662619
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||||| ||||| | ||||||| |||| |||||||||||||| ||||| |||||||||||||||||    
T  662683 aaggcaacccaaatggcgcaatt-aggcgactaggggcggaccgcaatt-aggcggaatttccaaca 662619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 34250499 - 34250564
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||||| ||||| ||||||||| ||||  ||||| || |||| |||||||||||||||||||||||    
T  34250499 aaggcaacccaaatgtcgcaatt-aggcggctaggagctgaccgcaattaaggcggaatttccaaca 34250564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 31606387 - 31606343
Alignment:
Q  47 ttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    |||||||||||||||  || |||||| ||||||||||||||||||    
T  31606387 ttaggcaactaggggatgagcacaataaaggcggaatttccaaca 31606343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 9e-23; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 35926368 - 35926434
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  35926368 aaggctaaccaaaggtcgcaatttaggcgactaggggcggaccgcaattaaggcggaatttccaaca 35926434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 19937184 - 19937257
Alignment:
Q  19 gcaagtaaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacac 92  Q
    |||| |||||| |||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||    
T  19937184 gcaattaaggctaaccaaaggtcgcaatttaggcgattaggggcggaccacaattaaggcagaatttccaacac 19937257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 17419750 - 17419678
Alignment:
Q  19 gcaagtaaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    |||| |||||| ||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||    
T  17419750 gcaattaaggctaaccaaaggtcgcaattaaggcgactaggggcagaccacaattaaggcggaatttccaaca 17419678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 31305668 - 31305601
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacac 92  Q
    ||||| |||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||    
T  31305668 aaggctaaccaaaggtcgcaatttaggcgactaggggtggaccgcaattaaggcggaatttccaacac 31305601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 8520382 - 8520448
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||| |||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||    
T  8520382 aaggctaaccaaaggtcgcaatttaggcgactaggggcggaccgcaattaaagcggaatttccaaca 8520448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 20735479 - 20735413
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||| |||||||||||||||||||||| ||||||||| |||| ||||||||||||||||| |||||    
T  20735479 aaggctaaccaaaggtcgcaatttaggcgactaggggcagaccgcaattaaggcggaattttcaaca 20735413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 45264620 - 45264553
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacac 92  Q
    ||||||||||||||| |||||||||||| || ||||||||||| |||| ||||| |||||||||||||    
T  45264620 aaggcaaaccaaaggccgcaatttaggcgacaaggggcggaccgcaataaaggcagaatttccaacac 45264553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 4022272 - 4022338
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||||||||||||| |||||||||||| || ||||||||||| |||| |||||| |||||||||||    
T  4022272 aaggcaaaccaaaggccgcaatttaggcgacaaggggcggaccgcaataaaggcgaaatttccaaca 4022338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 33879925 - 33879991
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    |||||||||||||||||||||||||||  |||||||| ||||| |||| ||||||| ||||||||||    
T  33879925 aaggcaaaccaaaggtcgcaatttaggtgactaggggtggaccgcaataaaggcggtatttccaaca 33879991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 33964330 - 33964264
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    |||||||||||||||||||||||||||  |||||||| ||||| |||| ||||||| ||||||||||    
T  33964330 aaggcaaaccaaaggtcgcaatttaggtgactaggggtggaccgcaataaaggcggtatttccaaca 33964264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 15013473 - 15013416
Alignment:
Q  34 caaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||||||||||||||||| |||||||||||||| ||| |||||| ||||||||||||    
T  15013473 caaaggtcgcaatttaggcgactaggggcggaccgcaactaaggcagaatttccaaca 15013416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 43423242 - 43423193
Alignment:
Q  42 gcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||||||||| ||||||||||||| ||||| ||||||||||||||||||    
T  43423242 gcaatttaggcgactaggggcggacaacaataaaggcggaatttccaaca 43423193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 2697482 - 2697546
Alignment:
Q  29 caaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacact 93  Q
    ||||||||||| | |||||||||| |||| ||| ||||| |||| ||||||||||||||||||||    
T  2697482 caaaccaaaggcctcaatttaggcgactaagggtggaccgcaataaaggcggaatttccaacact 2697546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 37600824 - 37600786
Alignment:
Q  55 ctaggggcggaccacaattaaggcggaatttccaacact 93  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  37600824 ctaggggcggaccgcaattaaggcggaatttccaacact 37600786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 8520240 - 8520299
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatt 84  Q
    ||||| |||||||||||||||||||||  |||||||||  ||| |||||||||| |||||    
T  8520240 aaggctaaccaaaggtcgcaatttaggtgactaggggcaaaccgcaattaaggcagaatt 8520299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 19810865 - 19810906
Alignment:
Q  47 ttaggcaactaggggcggaccacaattaaggcggaatttcca 88  Q
    ||||||| ||||||| |||||||||||||||| |||||||||    
T  19810865 ttaggcagctaggggtggaccacaattaaggcagaatttcca 19810906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 3e-22; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 13843976 - 13843903
Alignment:
Q  19 gcaagtaaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacac 92  Q
    |||| |||||| |||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  13843976 gcaattaaggctaaccgaaggtcgcaatttaggcgactaggggcggaccacaattaaggtggaatttccaacac 13843903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 13843660 - 13843588
Alignment:
Q  19 gcaagtaaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    |||| |||||| |||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  13843660 gcaattaaggctaaccgaaggtcgcaatttaggcgactaggggcggaccgcaattaaggcggaatttccaaca 13843588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 31 - 90
Target Start/End: Complemental strand, 27760026 - 27759967
Alignment:
Q  31 aaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaac 90  Q
    |||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||    
T  27760026 aaccaaaggtcgcaatttaggctactaggggaggaccgcaattaaggcggaatttccaac 27759967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 27760348 - 27760281
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacac 92  Q
    ||||| |||||||||||||||||||||| || |||||| |||| ||||||||||||||||||||||||    
T  27760348 aaggctaaccaaaggtcgcaatttaggcgaccaggggcagaccgcaattaaggcggaatttccaacac 27760281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 37995781 - 37995852
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacactatg 96  Q
    ||||||||||||||| |||||||||||| ||||||||| |||| |||| |||||||||||||||||| ||||    
T  37995781 aaggcaaaccaaaggccgcaatttaggcgactaggggcagaccgcaataaaggcggaatttccaacattatg 37995852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 12595250 - 12595316
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||| ||||||| |||| ||||||||| |||||||||||||| |||||||||||||||||||||||    
T  12595250 aaggctaaccaaaagtcgaaatttaggcgactaggggcggaccgcaattaaggcggaatttccaaca 12595316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 20837772 - 20837706
Alignment:
Q  19 gcaagtaaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaattt 85  Q
    |||| |||||| |||||||||||||||||||||| |||||||||||||| | |||||||||||||||    
T  20837772 gcaattaaggctaaccaaaggtcgcaatttaggcgactaggggcggaccgctattaaggcggaattt 20837706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 20811417 - 20811351
Alignment:
Q  19 gcaagtaaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaattt 85  Q
    |||| |||||| |||||||||||| ||||||||| |||||||||||||| | |||||||||||||||    
T  20811417 gcaattaaggctaaccaaaggtcggaatttaggcgactaggggcggaccgctattaaggcggaattt 20811351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 873843 - 873915
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacactatgta 98  Q
    ||||||||||||||| |||||||||||| || ||||||||||| |||| ||||||| |||||||||| ||||||    
T  873843 aaggcaaaccaaaggccgcaatttaggccac-aggggcggaccgcaataaaggcgggatttccaacagtatgta 873915  T

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Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 17016240 - 17016305
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacac 92  Q
    ||||| ||||||| ||||||||||||||| |||||| |||||| ||||||||||||||||||||||||    
T  17016240 aaggctaaccaaaagtcgcaatttaggca-ctaggg-cggaccgcaattaaggcggaatttccaacac 17016305  T

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Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 1028241 - 1028306
Alignment:
Q  26 aggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacac 92  Q
    |||| |||||||||| ||||||||||| |||||||| ||||  ||||||||||||||||||||||||    
T  1028241 aggctaaccaaaggttgcaatttaggcgactagggg-ggactgcaattaaggcggaatttccaacac 1028306  T

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Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 24918121 - 24918055
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||||||||||| ||| |||||||||| | |||||||||||| |||| ||||||||||||| ||||    
T  24918121 aaggcaaaccaaatgtcacaatttaggcgattaggggcggaccgcaatgaaggcggaatttcgaaca 24918055  T

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Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 28010263 - 28010329
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||||| ||||||| |||||||||||  ||||||||| |||| |||| ||||||||||||||||||    
T  28010263 aaggcaagccaaaggccgcaatttaggtgactaggggcagaccgcaataaaggcggaatttccaaca 28010329  T

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Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 24994029 - 24993963
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    |||| |||||||| |||||||||||||| | |||||||||||| |||| |||| |||||||| ||||    
T  24994029 aaggtaaaccaaatgtcgcaatttaggcgattaggggcggaccgcaataaaggtggaatttcgaaca 24993963  T

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Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 38131724 - 38131658
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||| ||||||||| | |||||||| | |||||||||||||| |||| ||||| ||||||||||||    
T  38131724 aaggccaaccaaaggccacaatttagacgactaggggcggaccgcaataaaggcagaatttccaaca 38131658  T

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Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 28009944 - 28010011
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaacac 92  Q
    ||||||| ||||| |  ||| ||||||| ||||||||| |||  ||||||||||||||||||||||||    
T  28009944 aaggcaagccaaatgctgcagtttaggcgactaggggcagactgcaattaaggcggaatttccaacac 28010011  T

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Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 91
Target Start/End: Original strand, 30588224 - 30588258
Alignment:
Q  57 aggggcggaccacaattaaggcggaatttccaaca 91  Q
    ||||||||||| |||||||||||||||||||||||    
T  30588224 aggggcggaccgcaattaaggcggaatttccaaca 30588258  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 904935 - 904971
Alignment:
Q  56 taggggcggaccacaattaaggcggaatttccaacac 92  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  904935 taggggcggaccacaatgaaggcagaatttccaacac 904971  T

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Target: scaffold0054 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 11174 - 11238
Alignment:
Q  25 aaggcaaaccaaaggtcgcaatttaggcaactaggggcggaccacaattaaggcggaatttccaa 89  Q
    |||||||||||||||||||||||||||| |||||||||| |||  ||| |||| |||||||||||    
T  11174 aaggcaaaccaaaggtcgcaatttaggcgactaggggcgtaccgtaataaaggtggaatttccaa 11238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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