View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8950_low_102 (Length: 235)
Name: NF8950_low_102
Description: NF8950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8950_low_102 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 33899883 - 33899689
Alignment:
| Q |
19 |
cacaagtgtcgttcggtatgagttcttcaagtatttaggagtaatttcggtggtggcttatttgaaaggcaaagaacgatcaaattttcaactcaaaagt |
118 |
Q |
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| T |
33899883 |
cacaagtgtggttcggtatgagttcttcaagtatttaggagtaatttcggtggtggcttatttgaaaggcaaagaacgatcaaattttcaactcaaaagt |
33899784 |
T |
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| Q |
119 |
agaagaggtggtggattccnnnnnnngttatcatgggaaataagtcgactacttgtgtatttattatgaatggctctcaagttatattttgaggtaa |
215 |
Q |
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| T |
33899783 |
agaagaggtggtggattccaaaaaaagttatcatgggaaataagtcgactacttgtgtatttattatgaatgg--ctcaagttatattttgaggtaa |
33899689 |
T |
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