View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8950_low_107 (Length: 229)
Name: NF8950_low_107
Description: NF8950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8950_low_107 |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 4004001 - 4003781
Alignment:
| Q |
1 |
tcggccaggaggtaaaagtaaggtctggccaataattgttcaacccaaaaatcgtactcaccttctcctaaacaatttatcgtttggtgaacctcatcaa |
100 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
4004001 |
tcggccaggaggtaa--gtaaggtctggccaataattgttcaacccaaaaatcgtactcaccttctcctaaacagtttatcgtttggtgaacctcgtcag |
4003904 |
T |
|
| Q |
101 |
ccacttgagcccaattgcttggtttagacacgtacatctaaactcattaattagagattagcaggtagtttttgttagatattgaaatgaagttataact |
200 |
Q |
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|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4003903 |
ccacttgagcccaattgcttggtttagacacttacatctaaactcattaattagagattagcaggtagtttttgttagatattgaaataaagttataact |
4003804 |
T |
|
| Q |
201 |
ataaatttatgccttatatggat |
223 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
4003803 |
ataaatttatgccttatatggat |
4003781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 24978812 - 24978715
Alignment:
| Q |
27 |
ggccaataattgttcaacccaaaaatcgtactcaccttctcctaaacaatttatcgtttggtgaacctcatcaaccacttgagcccaattgcttggtt |
124 |
Q |
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|||||| |||||||| ||| | ||||| |||||| |||||| ||||||||| || ||||||| | ||||| ||||||||||||||||| ||||||| |
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| T |
24978812 |
ggccaagaattgttccacctaggaatcgaactcacgttctcccaaacaatttgtcctttggtggaactcattaaccacttgagcccaatcacttggtt |
24978715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 25296823 - 25296926
Alignment:
| Q |
23 |
gtctggccaataattgttcaacccaaaaatcgtactcaccttctcctaaacaatttatcgtttggtgaacctcatcaaccacttgagcccaattgcttgg |
122 |
Q |
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|||||||||| |||||||| ||| | |||| ||||| ||||||| ||| ||| || ||||||| | ||||| ||||||||||||| |||||||||| |
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| T |
25296823 |
gtctggccaagaattgttccaccgaggaatcaaactcaagttctcctgaacgattcgtcctttggtggagctcattaaccacttgagccaaattgcttgg |
25296922 |
T |
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| Q |
123 |
ttta |
126 |
Q |
| |
|
|||| |
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|
| T |
25296923 |
ttta |
25296926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 124
Target Start/End: Complemental strand, 39526211 - 39526110
Alignment:
| Q |
23 |
gtctggccaataattgttcaacccaaaaatcgtactcaccttctcctaaacaatttatcgtttggtgaacctcatcaaccacttgagcccaattgcttgg |
122 |
Q |
| |
|
|||||||||| |||||||| ||| | |||||| || | |||||| |||||||| | ||||||| | ||||| | |||||||||||||||||||||| |
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| T |
39526211 |
gtctggccaagaattgttccacctagaaatcgaacctaggttctcccaaacaattcgttctttggtggagctcattagccacttgagcccaattgcttgg |
39526112 |
T |
|
| Q |
123 |
tt |
124 |
Q |
| |
|
|| |
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|
| T |
39526111 |
tt |
39526110 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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