View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8950_low_109 (Length: 227)
Name: NF8950_low_109
Description: NF8950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8950_low_109 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 12 - 209
Target Start/End: Complemental strand, 45399145 - 45398948
Alignment:
| Q |
12 |
gcagagatggtgagggactctcggtttggacaggtgattgtgagttgtgatagagttattaagctttggaataggaaaggggaaaaggagagatcttacc |
111 |
Q |
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| T |
45399145 |
gcagagatggtgagggactctcagtttcgacaggtgattgtgagttgtgatagagttattaagctttggaataggaaaggggaaaaggagagatcttacc |
45399046 |
T |
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| Q |
112 |
attgttaatggtatcctcaaattatgcaatagctttcacacgttagtttagaaatagtgggtaatagtgtaactcaaaatctagctcagttagctcat |
209 |
Q |
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| T |
45399045 |
attgttaatggtatcctcaaattatgcaatagctttcacacgtgagtttagaaatagtgggtaatagtgtgactcaaaatctagctcagttagctcat |
45398948 |
T |
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Target: chr7; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 30 - 209
Target Start/End: Original strand, 9357321 - 9357502
Alignment:
| Q |
30 |
tctcggtttggacaggtgattgtgagttgtgatagagttattaagctttggaataggaaaggggaaaaggagagatcttaccattgttaatggtatcctc |
129 |
Q |
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||||||||| ||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
9357321 |
tctcggtttccacaagtgattgtgagttgtgatagagttattaagtttttgaataggaaaggggaaaaagagagatcttaccattgttaatggtatcctc |
9357420 |
T |
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| Q |
130 |
aaattatgcaatagctttcacacgttagtttagaaatag--tgggtaatagtgtaactcaaaatctagctcagttagctcat |
209 |
Q |
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||||||||||||||||||||||||| ||||||||||||| ||||||||||| | ||||| |||||||| ||||||||||| |
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| T |
9357421 |
aaattatgcaatagctttcacacgtgagtttagaaatagattgggtaatagtatgactcataatctagcctagttagctcat |
9357502 |
T |
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