View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8950_low_118 (Length: 207)
Name: NF8950_low_118
Description: NF8950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8950_low_118 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 125; Significance: 1e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 33697846 - 33698018
Alignment:
| Q |
17 |
atcaaaaccaaaataaaaacctcctaacaacaccacctaaaataaattctttcacgaaacaatcactgaaaaatggcatccaaacccatcatcgcgacca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| | ||||||||||| |||||||||||||||||| |||| |
|
|
| T |
33697846 |
atcaaaaccaaaataaaaacctcctaacaacaccacctgaaataaattccttcacgaaacaaccgctgaaaaatggtatccaaacccatcatcgccacca |
33697945 |
T |
|
| Q |
117 |
ctcctccctaaaaaacccctctaaatgaaaaagcttgtcctcatcgataaagttgagcccatattgaaggaaa |
189 |
Q |
| |
|
|||||||| |||||| |||||||||||||| | ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
33697946 |
ctcctcccgaaaaaatccctctaaatgaaacaccttgtcctcatcgccaaagttgagcccatattgaaggaaa |
33698018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 42 - 161
Target Start/End: Original strand, 43816253 - 43816374
Alignment:
| Q |
42 |
aacaacaccacctaaaataaattctttcacgaaacaatcactgaaaaatggcatccaaacccatcatcgcgaccactcctccctaaaaa--acccctcta |
139 |
Q |
| |
|
|||| |||||||||||||| | ||||||||||||||| |||||||||| || ||||| || || |||||| || ||||||||| ||||| || |||||| |
|
|
| T |
43816253 |
aacatcaccacctaaaatagactctttcacgaaacaaccactgaaaaacggtatccatacacagcatcgccactactcctcccgaaaaaacactcctcta |
43816352 |
T |
|
| Q |
140 |
aatgaaaaagcttgtcctcatc |
161 |
Q |
| |
|
||||||| | |||||||||||| |
|
|
| T |
43816353 |
aatgaaacaccttgtcctcatc |
43816374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 15457277 - 15457215
Alignment:
| Q |
27 |
aaataaaaacctcctaacaacaccacctaaaataaattctttcacgaaacaatcactgaaaaa |
89 |
Q |
| |
|
|||| |||||||||||||| |||||||||||| |||||| |||||||||||| |||||||||| |
|
|
| T |
15457277 |
aaatcaaaacctcctaacagcaccacctaaaacaaattccttcacgaaacaaccactgaaaaa |
15457215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 157
Target Start/End: Original strand, 11378927 - 11379042
Alignment:
| Q |
42 |
aacaacaccacctaaaataaattctttcacgaaacaatcactgaaaaatggcatccaaacccatcatcgcgaccactcctccctaaaaaacccctctaaa |
141 |
Q |
| |
|
|||| |||||||||||| | |||| |||| ||||||| |||||||||| | ||||||| ||| ||||| || ||||||||| |||||||||||||||| |
|
|
| T |
11378927 |
aacatcaccacctaaaacagattccttcaagaaacaaccactgaaaaacagtatccaaaaccagtatcgccactactcctcccgaaaaaacccctctaaa |
11379026 |
T |
|
| Q |
142 |
tgaaaaagcttgtcct |
157 |
Q |
| |
|
||||| | |||||||| |
|
|
| T |
11379027 |
tgaaacaccttgtcct |
11379042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 48 - 161
Target Start/End: Original strand, 46698592 - 46698702
Alignment:
| Q |
48 |
accacctaaaataaattctttcacgaaacaatcactgaaaaatggcatccaaacccatcatcgcgaccactcctccctaaaaaacccctctaaatgaaaa |
147 |
Q |
| |
|
||||||||||| | |||| |||| ||||||| ||||||||| || ||||| | ||| |||||| || ||||||||| ||||| |||||||||||||| |
|
|
| T |
46698592 |
accacctaaaacagattccttcaggaaacaaccactgaaaac-ggtatccataaccaacatcgctactactcctcccgaaaaa--ccctctaaatgaaac |
46698688 |
T |
|
| Q |
148 |
agcttgtcctcatc |
161 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
46698689 |
accttgtcctcatc |
46698702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University