View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8950_low_120 (Length: 205)

Name: NF8950_low_120
Description: NF8950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8950_low_120
NF8950_low_120
[»] chr6 (18 HSPs)
chr6 (93-205)||(24711094-24711206)
chr6 (93-205)||(30832619-30832730)
chr6 (94-156)||(21280336-21280398)
chr6 (93-157)||(23070889-23070953)
chr6 (93-152)||(13727654-13727713)
chr6 (93-152)||(21479286-21479345)
chr6 (93-148)||(27314773-27314828)
chr6 (97-150)||(19741230-19741283)
chr6 (93-157)||(12083640-12083704)
chr6 (84-148)||(27579084-27579148)
chr6 (93-152)||(33773902-33773960)
chr6 (101-157)||(1156017-1156073)
chr6 (177-205)||(13727494-13727522)
chr6 (100-140)||(17353768-17353808)
chr6 (177-205)||(19737787-19737815)
chr6 (177-205)||(21479477-21479505)
chr6 (100-140)||(27788939-27788979)
chr6 (177-205)||(33774100-33774128)
[»] chr5 (13 HSPs)
chr5 (93-205)||(15480181-15480293)
chr5 (93-205)||(19523095-19523207)
chr5 (94-201)||(36187975-36188082)
chr5 (93-150)||(31881597-31881654)
chr5 (95-152)||(34756619-34756676)
chr5 (93-150)||(30853268-30853325)
chr5 (93-157)||(16592845-16592909)
chr5 (93-152)||(22987472-22987532)
chr5 (93-159)||(2274800-2274866)
chr5 (176-205)||(2274869-2274898)
chr5 (100-140)||(16199043-16199083)
chr5 (177-205)||(16592166-16592194)
chr5 (93-157)||(31194767-31194831)
[»] chr1 (20 HSPs)
chr1 (93-205)||(3406325-3406437)
chr1 (93-205)||(3440383-3440495)
chr1 (93-205)||(41697231-41697343)
chr1 (93-205)||(14146207-14146319)
chr1 (99-205)||(6771704-6771810)
chr1 (95-205)||(6888473-6888583)
chr1 (93-205)||(16139962-16140074)
chr1 (93-152)||(44655541-44655600)
chr1 (93-152)||(27906953-27907012)
chr1 (100-157)||(10912094-10912151)
chr1 (93-137)||(50880570-50880614)
chr1 (103-149)||(5027982-5028028)
chr1 (100-157)||(23181720-23181777)
chr1 (97-140)||(13913733-13913776)
chr1 (97-140)||(40502041-40502084)
chr1 (100-140)||(1367128-1367168)
chr1 (177-205)||(5316671-5316699)
chr1 (177-205)||(27906811-27906839)
chr1 (177-205)||(44655732-44655760)
chr1 (100-140)||(44895476-44895516)
[»] chr7 (10 HSPs)
chr7 (93-205)||(10955380-10955492)
chr7 (93-205)||(12596381-12596493)
chr7 (93-157)||(28749583-28749647)
chr7 (93-152)||(18777023-18777082)
chr7 (95-157)||(29076934-29076998)
chr7 (177-205)||(8171633-8171661)
chr7 (100-140)||(19691906-19691946)
chr7 (100-140)||(24525935-24525975)
chr7 (177-205)||(29077200-29077228)
chr7 (100-140)||(47985219-47985259)
[»] chr3 (22 HSPs)
chr3 (93-205)||(53149409-53149521)
chr3 (93-205)||(21582670-21582782)
chr3 (93-205)||(42098700-42098812)
chr3 (93-205)||(47467584-47467695)
chr3 (93-174)||(50258717-50258798)
chr3 (93-152)||(36716280-36716339)
chr3 (93-152)||(38681352-38681411)
chr3 (100-157)||(1148354-1148411)
chr3 (93-150)||(3954859-3954916)
chr3 (93-152)||(27078823-27078882)
chr3 (93-152)||(27084620-27084679)
chr3 (99-152)||(54619458-54619511)
chr3 (93-157)||(13795189-13795253)
chr3 (93-138)||(29620618-29620663)
chr3 (107-152)||(36605862-36605907)
chr3 (93-152)||(18372035-18372093)
chr3 (177-205)||(3953991-3954019)
chr3 (101-157)||(8074087-8074143)
chr3 (100-140)||(9878936-9878976)
chr3 (100-140)||(48156951-48156991)
chr3 (100-140)||(53507134-53507174)
chr3 (177-205)||(54619298-54619326)
[»] chr2 (19 HSPs)
chr2 (93-205)||(7162679-7162791)
chr2 (93-205)||(3952901-3953013)
chr2 (92-152)||(6964793-6964853)
chr2 (93-152)||(3155005-3155064)
chr2 (93-157)||(12337689-12337753)
chr2 (93-157)||(40635964-40636028)
chr2 (93-152)||(4505681-4505740)
chr2 (93-152)||(34693149-34693208)
chr2 (93-152)||(34715561-34715620)
chr2 (93-152)||(3399511-3399570)
chr2 (95-151)||(8907335-8907391)
chr2 (91-138)||(5952949-5952995)
chr2 (93-157)||(41213928-41213992)
chr2 (97-140)||(27506992-27507035)
chr2 (177-205)||(3155196-3155224)
chr2 (177-205)||(4505873-4505901)
chr2 (177-205)||(6964986-6965014)
chr2 (177-205)||(12337543-12337571)
chr2 (100-140)||(26715940-26715980)
[»] chr8 (13 HSPs)
chr8 (93-194)||(20003839-20003940)
chr8 (93-205)||(37430253-37430365)
chr8 (93-152)||(2952477-2952536)
chr8 (93-152)||(5861000-5861059)
chr8 (93-152)||(30883112-30883171)
chr8 (93-152)||(3048778-3048837)
chr8 (101-157)||(45472201-45472257)
chr8 (93-149)||(41878167-41878223)
chr8 (97-140)||(42600590-42600633)
chr8 (177-205)||(2952316-2952344)
chr8 (177-205)||(13534781-13534809)
chr8 (177-205)||(13624321-13624349)
chr8 (177-205)||(30883309-30883337)
[»] chr4 (29 HSPs)
chr4 (93-198)||(37514560-37514665)
chr4 (105-201)||(1105445-1105541)
chr4 (93-205)||(5128936-5129047)
chr4 (93-157)||(10431442-10431506)
chr4 (93-205)||(32915299-32915398)
chr4 (93-152)||(55255082-55255141)
chr4 (93-157)||(47127983-47128047)
chr4 (94-157)||(17679220-17679283)
chr4 (93-157)||(45560704-45560768)
chr4 (90-157)||(13459783-13459850)
chr4 (94-157)||(48208453-48208516)
chr4 (100-157)||(27596639-27596696)
chr4 (110-157)||(9579469-9579516)
chr4 (110-157)||(9585164-9585211)
chr4 (107-157)||(34769533-34769583)
chr4 (100-150)||(54779450-54779500)
chr4 (85-138)||(10978138-10978191)
chr4 (107-152)||(38209846-38209891)
chr4 (94-135)||(23510922-23510963)
chr4 (104-157)||(35780556-35780609)
chr4 (100-157)||(19498322-19498379)
chr4 (177-205)||(9578733-9578761)
chr4 (177-205)||(10978885-10978913)
chr4 (177-205)||(23509892-23509920)
chr4 (100-140)||(24969251-24969291)
chr4 (177-205)||(34768668-34768696)
chr4 (177-205)||(38209685-38209713)
chr4 (177-205)||(47128972-47129000)
chr4 (177-205)||(55255254-55255282)
[»] scaffold0001 (2 HSPs)
scaffold0001 (129-205)||(181851-181927)
scaffold0001 (93-136)||(181437-181480)
[»] scaffold0070 (2 HSPs)
scaffold0070 (93-150)||(1013-1070)
scaffold0070 (177-205)||(1323-1351)


Alignment Details
Target: chr6 (Bit Score: 97; Significance: 7e-48; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 93 - 205
Target Start/End: Complemental strand, 24711206 - 24711094
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaagagtgggggttcctcataattgattttggtgttag 192  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  24711206 ggggcgtccctgagggggtgcaaacagctcaaacaagctgggcctcccccaaggatgggcctcaagagtgggggttcctcatgattgattttggtgttag 24711107  T
Q  193 gtgggggttcctc 205  Q
    |||||||||||||    
T  24711106 gtgggggttcctc 24711094  T

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Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 93 - 205
Target Start/End: Complemental strand, 30832730 - 30832619
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaagagtgggggttcctcataattgattttggtgttag 192  Q
    ||||||||| ||||||| |||||| |||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  30832730 ggggcgtccttgagggg-tgcaaacagctcaaatgagctgggcctccctcaaggatgggcctcaagagtgggggttcctcatgattgattttggtgttag 30832632  T
Q  193 gtgggggttcctc 205  Q
    |||||||||||||    
T  30832631 gtgggggttcctc 30832619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 21280336 - 21280398
Alignment:
Q  94 gggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttca 156  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  21280336 gggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcttca 21280398  T

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Target: chr6; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 23070953 - 23070889
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaa 157  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||    
T  23070953 ggggcgtccttgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 23070889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 93 - 152
Target Start/End: Complemental strand, 13727713 - 13727654
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggc 152  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||    
T  13727713 ggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaagatgggc 13727654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 93 - 152
Target Start/End: Original strand, 21479286 - 21479345
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggc 152  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||    
T  21479286 ggggcgtccctgagggggtgcaaacagctaaaacgagctgggcctccctcaaggatgggc 21479345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 93 - 148
Target Start/End: Complemental strand, 27314828 - 27314773
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggat 148  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  27314828 ggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggat 27314773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 19741283 - 19741230
Alignment:
Q  97 cgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgg 150  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  19741283 cgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgg 19741230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 12083704 - 12083640
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaa 157  Q
    ||||||||| |||||||||||||| |||||||||||||||||||| || ||||||||||| ||||    
T  12083704 ggggcgtccttgagggggtgcaaacagctcaaacgagctgggccttcctcaaggatgggcctcaa 12083640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 27579148 - 27579084
Alignment:
Q  84 atatgatctggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggat 148  Q
    |||||| | ||||||||||| |||||||||||  ||||||||||||||||||||||| |||||||    
T  27579148 atatgagcaggggcgtccctaagggggtgcaaccagctcaaacgagctgggcctccctcaaggat 27579084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 93 - 152
Target Start/End: Original strand, 33773902 - 33773960
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggc 152  Q
    |||||||||||||||||||||||| | |||||| |||||||||||||| |||||||||||    
T  33773902 ggggcgtccctgagggggtgcaaaca-ctcaaatgagctgggcctccctcaaggatgggc 33773960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 1156073 - 1156017
Alignment:
Q  101 cctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaa 157  Q
    |||||||||||||||| |||||||||||||| || |||||  |||||||||| ||||    
T  1156073 cctgagggggtgcaaacagctcaaacgagctaggtctcccttaaggatgggcctcaa 1156017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Complemental strand, 13727522 - 13727494
Alignment:
Q  177 ttgattttggtgttaggtgggggttcctc 205  Q
    |||||||||||||||||||||||||||||    
T  13727522 ttgattttggtgttaggtgggggttcctc 13727494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 17353768 - 17353808
Alignment:
Q  100 ccctgagggggtgcaaatagctcaaacgagctgggcctccc 140  Q
    ||||||||||||||||| |||||||  ||||||||||||||    
T  17353768 ccctgagggggtgcaaacagctcaacagagctgggcctccc 17353808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Complemental strand, 19737815 - 19737787
Alignment:
Q  177 ttgattttggtgttaggtgggggttcctc 205  Q
    |||||||||||||||||||||||||||||    
T  19737815 ttgattttggtgttaggtgggggttcctc 19737787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Original strand, 21479477 - 21479505
Alignment:
Q  177 ttgattttggtgttaggtgggggttcctc 205  Q
    |||||||||||||||||||||||||||||    
T  21479477 ttgattttggtgttaggtgggggttcctc 21479505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 27788979 - 27788939
Alignment:
Q  100 ccctgagggggtgcaaatagctcaaacgagctgggcctccc 140  Q
    ||||||||||||||||| |||||||  ||||||||||||||    
T  27788979 ccctgagggggtgcaaacagctcaacagagctgggcctccc 27788939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Original strand, 33774100 - 33774128
Alignment:
Q  177 ttgattttggtgttaggtgggggttcctc 205  Q
    |||||||||||||||||||||||||||||    
T  33774100 ttgattttggtgttaggtgggggttcctc 33774128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 7e-48; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 93 - 205
Target Start/End: Complemental strand, 15480293 - 15480181
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaagagtgggggttcctcataattgattttggtgttag 192  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  15480293 ggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggttcctcatgattgattttggtgttag 15480194  T
Q  193 gtgggggttcctc 205  Q
    |||||||||||||    
T  15480193 gtgggggttcctc 15480181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 93 - 205
Target Start/End: Original strand, 19523095 - 19523207
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaagagtgggggttcctcataattgattttggtgttag 192  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  19523095 ggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggttcctcatgattgattttggtgttag 19523194  T
Q  193 gtgggggttcctc 205  Q
    |||||||||||||    
T  19523195 gtgggggttcctc 19523207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 94 - 201
Target Start/End: Complemental strand, 36188082 - 36187975
Alignment:
Q  94 gggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaagagtgggggttcctcataattgattttggtgttagg 193  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||| ||| ||||||||||||||    
T  36188082 gggcgtccctgagggggtgcaaacagctcaaacgagttgggcctccctcaaggatgggcctcaagagtgggggttcctcatgattaattttggtgttagg 36187983  T
Q  194 tgggggtt 201  Q
    ||| ||||    
T  36187982 tggaggtt 36187975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 93 - 150
Target Start/End: Complemental strand, 31881654 - 31881597
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgg 150  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  31881654 ggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgg 31881597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 95 - 152
Target Start/End: Complemental strand, 34756676 - 34756619
Alignment:
Q  95 ggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggc 152  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  34756676 ggcgttcctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggc 34756619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 93 - 150
Target Start/End: Original strand, 30853268 - 30853325
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgg 150  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||  |||||||||    
T  30853268 ggggcgtcccttagggggtgcaaacagctcaaacgagctgggcctccttcaaggatgg 30853325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 16592909 - 16592845
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaa 157  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||   |||||||||| ||||    
T  16592909 ggggcgtccctgagggggtgcaaacagctcaaacgagctggacctcctttaaggatgggcctcaa 16592845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 152
Target Start/End: Complemental strand, 22987532 - 22987472
Alignment:
Q  93 ggggcgtccctgaggggg-tgcaaatagctcaaacgagctgggcctcccccaaggatgggc 152  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||| ||| |||||||    
T  22987532 ggggcgtccctgaggggggtgcaaacagctcaaacgagctgggcctccctcaaagatgggc 22987472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 159
Target Start/End: Original strand, 2274800 - 2274866
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaaga 159  Q
    ||||||| |||||||||||||||| |||||||| ||| |||||||||| ||||||||| | ||||||    
T  2274800 ggggcgttcctgagggggtgcaaacagctcaaatgagttgggcctccctcaaggatggacctcaaga 2274866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 176 - 205
Target Start/End: Original strand, 2274869 - 2274898
Alignment:
Q  176 attgattttggtgttaggtgggggttcctc 205  Q
    ||||||||||||||||||||||||||||||    
T  2274869 attgattttggtgttaggtgggggttcctc 2274898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 16199083 - 16199043
Alignment:
Q  100 ccctgagggggtgcaaatagctcaaacgagctgggcctccc 140  Q
    ||||||||||||||||| |||||||  ||||||||||||||    
T  16199083 ccctgagggggtgcaaacagctcaacagagctgggcctccc 16199043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Complemental strand, 16592194 - 16592166
Alignment:
Q  177 ttgattttggtgttaggtgggggttcctc 205  Q
    |||||||||||||||||||||||||||||    
T  16592194 ttgattttggtgttaggtgggggttcctc 16592166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 31194831 - 31194767
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaa 157  Q
    ||||||| || |||| |||||||| | ||||||||| ||||||||| | ||||||||||| ||||    
T  31194831 ggggcgttccagaggaggtgcaaacaactcaaacgaactgggcctctctcaaggatgggcctcaa 31194767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 7e-48; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 93 - 205
Target Start/End: Original strand, 3406325 - 3406437
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaagagtgggggttcctcataattgattttggtgttag 192  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  3406325 ggggcgtccttgagggggtgcaaacagctcaaacgagctgggcctcccccaaggatgggcctcaagagtgggggttcctcatgattgattttggtgttag 3406424  T
Q  193 gtgggggttcctc 205  Q
    |||||||||||||    
T  3406425 gtgggggttcctc 3406437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 93 - 205
Target Start/End: Complemental strand, 3440495 - 3440383
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaagagtgggggttcctcataattgattttggtgttag 192  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  3440495 ggggcgtccttgagggggtgcaaacagctcaaacgagctgggcctcccccaaggatgggcctcaagagtgggggttcctcatgattgattttggtgttag 3440396  T
Q  193 gtgggggttcctc 205  Q
    |||||||||||||    
T  3440395 gtgggggttcctc 3440383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 93 - 205
Target Start/End: Complemental strand, 41697343 - 41697231
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaagagtgggggttcctcataattgattttggtgttag 192  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  41697343 ggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcatcaagagtgggggttcctcatgattgattttggtgttag 41697244  T
Q  193 gtgggggttcctc 205  Q
    |||||||||||||    
T  41697243 gtgggggttcctc 41697231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 93 - 205
Target Start/End: Original strand, 14146207 - 14146319
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaagagtgggggttcctcataattgattttggtgttag 192  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||| |||||||||||||    
T  14146207 ggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggttcctcatgattaattttggtgttag 14146306  T
Q  193 gtgggggttcctc 205  Q
    |||||||||||||    
T  14146307 gtgggggttcctc 14146319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 99 - 205
Target Start/End: Original strand, 6771704 - 6771810
Alignment:
Q  99 tccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaagagtgggggttcctcataattgattttggtgttaggtgggg 198  Q
    |||||||||||||||||| |||||||||||||||||||||||  |||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |    
T  6771704 tccctgagggggtgcaaacagctcaaacgagctgggcctcccttaaggatgggcctcaagagtgggggttcctcatgattgattttggtgttaggtggag 6771803  T
Q  199 gttcctc 205  Q
    |||||||    
T  6771804 gttcctc 6771810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 95 - 205
Target Start/End: Original strand, 6888473 - 6888583
Alignment:
Q  95 ggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaagagtgggggttcctcataattgattttggtgttaggt 194  Q
    |||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||| |     
T  6888473 ggcgtccctgagggggtgcaaacagctcaaacgagttgggcctccctcaaggatgggcctcaagagtgggggttcctcatgattgattttggtgttaagc 6888572  T
Q  195 gggggttcctc 205  Q
    |||||||||||    
T  6888573 gggggttcctc 6888583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 93 - 205
Target Start/End: Original strand, 16139962 - 16140074
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaagagtgggggttcctcataattgattttggtgttag 192  Q
    ||||||||| |||||||||||||| |||||||||||| |||||||||| ||||||||||  ||||| ||||||||||||||| ||||||||| |||||||    
T  16139962 ggggcgtccttgagggggtgcaaacagctcaaacgagttgggcctccctcaaggatgggtctcaagcgtgggggttcctcatgattgattttagtgttag 16140061  T
Q  193 gtgggggttcctc 205  Q
    |||||| ||||||    
T  16140062 gtggggattcctc 16140074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 93 - 152
Target Start/End: Original strand, 44655541 - 44655600
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggc 152  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  44655541 ggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggc 44655600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 93 - 152
Target Start/End: Complemental strand, 27907012 - 27906953
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggc 152  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  27907012 ggggcgtccttgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggc 27906953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 10912151 - 10912094
Alignment:
Q  100 ccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaa 157  Q
    |||||||||||||| || |||||||||||||||||||||| |||||||||||| ||||    
T  10912151 ccctgagggggtgcgaacagctcaaacgagctgggcctcctccaaggatgggcctcaa 10912094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 50880570 - 50880614
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcct 137  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  50880570 ggggcgtccctgagggggtgcaaacagctcaaacgagctgggcct 50880614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 103 - 149
Target Start/End: Complemental strand, 5028028 - 5027982
Alignment:
Q  103 tgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatg 149  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||    
T  5028028 tgagggggtgcaaacagctcaaccgagctgggcctcccccaaggatg 5027982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 157
Target Start/End: Original strand, 23181720 - 23181777
Alignment:
Q  100 ccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaa 157  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||||| ||||||| ||||    
T  23181720 ccctgagggggtgcaaacagctcaaccgagctgggccacccccaatgatgggcctcaa 23181777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 97 - 140
Target Start/End: Complemental strand, 13913776 - 13913733
Alignment:
Q  97 cgtccctgagggggtgcaaatagctcaaacgagctgggcctccc 140  Q
    |||||||||||||||||||| |||||||  ||||||||||||||    
T  13913776 cgtccctgagggggtgcaaacagctcaacagagctgggcctccc 13913733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 97 - 140
Target Start/End: Complemental strand, 40502084 - 40502041
Alignment:
Q  97 cgtccctgagggggtgcaaatagctcaaacgagctgggcctccc 140  Q
    |||||||||||||||||||| |||||||  ||||||||||||||    
T  40502084 cgtccctgagggggtgcaaacagctcaacagagctgggcctccc 40502041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 1367168 - 1367128
Alignment:
Q  100 ccctgagggggtgcaaatagctcaaacgagctgggcctccc 140  Q
    ||||||||||||||||| |||||||  ||||||||||||||    
T  1367168 ccctgagggggtgcaaacagctcaacagagctgggcctccc 1367128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Original strand, 5316671 - 5316699
Alignment:
Q  177 ttgattttggtgttaggtgggggttcctc 205  Q
    |||||||||||||||||||||||||||||    
T  5316671 ttgattttggtgttaggtgggggttcctc 5316699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Complemental strand, 27906839 - 27906811
Alignment:
Q  177 ttgattttggtgttaggtgggggttcctc 205  Q
    |||||||||||||||||||||||||||||    
T  27906839 ttgattttggtgttaggtgggggttcctc 27906811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Original strand, 44655732 - 44655760
Alignment:
Q  177 ttgattttggtgttaggtgggggttcctc 205  Q
    |||||||||||||||||||||||||||||    
T  44655732 ttgattttggtgttaggtgggggttcctc 44655760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 44895476 - 44895516
Alignment:
Q  100 ccctgagggggtgcaaatagctcaaacgagctgggcctccc 140  Q
    ||||||||||||||||| |||||||  ||||||||||||||    
T  44895476 ccctgagggggtgcaaacagctcaacagagctgggcctccc 44895516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 93 - 205
Target Start/End: Original strand, 10955380 - 10955492
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaagagtgggggttcctcataattgattttggtgttag 192  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  10955380 ggggcgtccttgagggggtgcaaatagctcaaacgagttgggcctccctcaaggatgggcctcaagagtgggggttcctcatgattgattttggtgttag 10955479  T
Q  193 gtgggggttcctc 205  Q
    |||||||||||||    
T  10955480 gtgggggttcctc 10955492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 93 - 205
Target Start/End: Complemental strand, 12596493 - 12596381
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaagagtgggggttcctcataattgattttggtgttag 192  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||| |||||||||||||||||    
T  12596493 ggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatggccctcaagagtgggggttcctcatgattgattttggtgttag 12596394  T
Q  193 gtgggggttcctc 205  Q
    |||||||||||||    
T  12596393 gtgggggttcctc 12596381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 93 - 157
Target Start/End: Original strand, 28749583 - 28749647
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaa 157  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||    
T  28749583 ggggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 28749647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 93 - 152
Target Start/End: Complemental strand, 18777082 - 18777023
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggc 152  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||    
T  18777082 ggggcgtccctgaggaggtgcaaacagctcaaacgagctgggcctccctcaaggatgggc 18777023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 157
Target Start/End: Original strand, 29076934 - 29076998
Alignment:
Q  95 ggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccc--caaggatgggcttcaa 157  Q
    ||||| |||||||||||||||| |||| |||||||| ||||||||||  ||||||||||| ||||    
T  29076934 ggcgttcctgagggggtgcaaacagcttaaacgagcagggcctccccctcaaggatgggcctcaa 29076998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Complemental strand, 8171661 - 8171633
Alignment:
Q  177 ttgattttggtgttaggtgggggttcctc 205  Q
    |||||||||||||||||||||||||||||    
T  8171661 ttgattttggtgttaggtgggggttcctc 8171633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 19691906 - 19691946
Alignment:
Q  100 ccctgagggggtgcaaatagctcaaacgagctgggcctccc 140  Q
    ||||||||||||||||| |||||||  ||||||||||||||    
T  19691906 ccctgagggggtgcaaacagctcaacagagctgggcctccc 19691946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 24525975 - 24525935
Alignment:
Q  100 ccctgagggggtgcaaatagctcaaacgagctgggcctccc 140  Q
    ||||||||||||||||| |||||||  ||||||||||||||    
T  24525975 ccctgagggggtgcaaacagctcaacagagctgggcctccc 24525935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Original strand, 29077200 - 29077228
Alignment:
Q  177 ttgattttggtgttaggtgggggttcctc 205  Q
    |||||||||||||||||||||||||||||    
T  29077200 ttgattttggtgttaggtgggggttcctc 29077228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 47985259 - 47985219
Alignment:
Q  100 ccctgagggggtgcaaatagctcaaacgagctgggcctccc 140  Q
    ||||||||||||||||| |||||||  ||||||||||||||    
T  47985259 ccctgagggggtgcaaacagctcaacagagctgggcctccc 47985219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 93 - 205
Target Start/End: Complemental strand, 53149521 - 53149409
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaagagtgggggttcctcataattgattttggtgttag 192  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  53149521 ggggcgtccctcagggggtgcaaacagctcaaacgagctgggcctccaccaaggatgggcctcaagagtgggggttcctcatgattgattttggtgttag 53149422  T
Q  193 gtgggggttcctc 205  Q
    |||||||||||||    
T  53149421 gtgggggttcctc 53149409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 93 - 205
Target Start/End: Original strand, 21582670 - 21582782
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaagagtgggggttcctcataattgattttggtgttag 192  Q
    |||||||| ||||||||||||||| |||||||||||||||||| ||||  |||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  21582670 ggggcgtctctgagggggtgcaaacagctcaaacgagctgggcatcccttaaggatgggcctcaagagtgggggttcctcatgattgattttggtgttag 21582769  T
Q  193 gtgggggttcctc 205  Q
    |||||||||||||    
T  21582770 gtgggggttcctc 21582782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 93 - 205
Target Start/End: Original strand, 42098700 - 42098812
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaagagtgggggttcctcataattgattttggtgttag 192  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||     
T  42098700 ggggcgtccctgagggggtgcaaacagctcaaacgagttgggcctcccacaaggatgggcctcaagagtgggggttcctcatgattgattttggtgttaa 42098799  T
Q  193 gtgggggttcctc 205  Q
    || ||||||||||    
T  42098800 gtaggggttcctc 42098812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 93 - 205
Target Start/End: Original strand, 47467584 - 47467695
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaagagtgggggttcctcataattgattttggtgttag 192  Q
    ||||||||||||||||| |||||| ||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  47467584 ggggcgtccctgagggg-tgcaaacagctcaaacgagctgagcctccctcaaggatgggcctcaagagtgggggttcctcatgattgattttggtgttag 47467682  T
Q  193 gtgggggttcctc 205  Q
    |||||||||||||    
T  47467683 gtgggggttcctc 47467695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 93 - 174
Target Start/End: Complemental strand, 50258798 - 50258717
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaagagtgggggttcctcat 174  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||    
T  50258798 ggggcgtccctgagggggtgcaaacagctcaaatgagctgggcctccctcaaggatgggcctcaagagtgggggttcctcat 50258717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 93 - 152
Target Start/End: Complemental strand, 36716339 - 36716280
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggc 152  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  36716339 ggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggc 36716280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 93 - 152
Target Start/End: Complemental strand, 38681411 - 38681352
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggc 152  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  38681411 ggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggc 38681352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 1148411 - 1148354
Alignment:
Q  100 ccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaa 157  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  1148411 ccctgagggggtgcgaacagctcaaacgagctgggcctcccccaaggatgggcttcaa 1148354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 93 - 150
Target Start/End: Complemental strand, 3954916 - 3954859
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgg 150  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  3954916 ggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgg 3954859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 93 - 152
Target Start/End: Complemental strand, 27078882 - 27078823
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggc 152  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  27078882 ggggcgttcctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggc 27078823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 93 - 152
Target Start/End: Complemental strand, 27084679 - 27084620
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggc 152  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  27084679 ggggcgttcctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggc 27084620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 54619511 - 54619458
Alignment:
Q  99 tccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggc 152  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  54619511 tccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggc 54619458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 93 - 157
Target Start/End: Original strand, 13795189 - 13795253
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaa 157  Q
    ||||||||| |||||| ||||||| ||||||||||||||||||||||| ||||||||||| ||||    
T  13795189 ggggcgtccttgagggcgtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 13795253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 93 - 138
Target Start/End: Complemental strand, 29620663 - 29620618
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctc 138  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  29620663 ggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctc 29620618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 152
Target Start/End: Original strand, 36605862 - 36605907
Alignment:
Q  107 ggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggc 152  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||    
T  36605862 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggc 36605907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 93 - 152
Target Start/End: Original strand, 18372035 - 18372093
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggc 152  Q
    |||||||| |||||||| |||||| || |||||||||||||| ||||| |||||||||||    
T  18372035 ggggcgtctctgagggg-tgcaaacagttcaaacgagctggggctccctcaaggatgggc 18372093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Complemental strand, 3954019 - 3953991
Alignment:
Q  177 ttgattttggtgttaggtgggggttcctc 205  Q
    |||||||||||||||||||||||||||||    
T  3954019 ttgattttggtgttaggtgggggttcctc 3953991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 8074143 - 8074087
Alignment:
Q  101 cctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaa 157  Q
    ||||||||  |||||| | ||||| |||||||||||||| |||||||||||| ||||    
T  8074143 cctgagggattgcaaacaactcaatcgagctgggcctcctccaaggatgggcctcaa 8074087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 9878976 - 9878936
Alignment:
Q  100 ccctgagggggtgcaaatagctcaaacgagctgggcctccc 140  Q
    ||||||||||||||||| |||||||  ||||||||||||||    
T  9878976 ccctgagggggtgcaaacagctcaacagagctgggcctccc 9878936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 48156951 - 48156991
Alignment:
Q  100 ccctgagggggtgcaaatagctcaaacgagctgggcctccc 140  Q
    ||||||||||||||||| |||||||  ||||||||||||||    
T  48156951 ccctgagggggtgcaaacagctcaacagagctgggcctccc 48156991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 53507174 - 53507134
Alignment:
Q  100 ccctgagggggtgcaaatagctcaaacgagctgggcctccc 140  Q
    ||||||||||||||||| |||||||  ||||||||||||||    
T  53507174 ccctgagggggtgcaaacagctcaacagagctgggcctccc 53507134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Complemental strand, 54619326 - 54619298
Alignment:
Q  177 ttgattttggtgttaggtgggggttcctc 205  Q
    |||||||||||||||||||||||||||||    
T  54619326 ttgattttggtgttaggtgggggttcctc 54619298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 93 - 205
Target Start/End: Original strand, 7162679 - 7162791
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaagagtgggggttcctcataattgattttggtgttag 192  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  7162679 ggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctcccacaaggatgggcctcaagagtgggggttcctcatgattgattttggtgttag 7162778  T
Q  193 gtgggggttcctc 205  Q
    || ||||||||||    
T  7162779 gtaggggttcctc 7162791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 93 - 205
Target Start/End: Original strand, 3952901 - 3953013
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaagagtgggggttcctcataattgattttggtgttag 192  Q
    |||| ||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  3952901 ggggtgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggttcctcatgattgattttggtgttag 3953000  T
Q  193 gtgggggttcctc 205  Q
    |||||||||||||    
T  3953001 gtgggggttcctc 3953013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 92 - 152
Target Start/End: Original strand, 6964793 - 6964853
Alignment:
Q  92 tggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggc 152  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  6964793 tggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggc 6964853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 93 - 152
Target Start/End: Original strand, 3155005 - 3155064
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggc 152  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  3155005 ggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggc 3155064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 12337753 - 12337689
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaa 157  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||| ||||    
T  12337753 ggggcgtccctgagggggtgcaaacagctcaaacgagctgagcctccctcaaggatgggcctcaa 12337689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 93 - 157
Target Start/End: Original strand, 40635964 - 40636028
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaa 157  Q
    ||||||||||| |||||||||||| |||||||||||| |||||||||| ||||||||||||||||    
T  40635964 ggggcgtccctaagggggtgcaaacagctcaaacgagttgggcctccctcaaggatgggcttcaa 40636028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 93 - 152
Target Start/End: Original strand, 4505681 - 4505740
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggc 152  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||    
T  4505681 ggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaatgatgggc 4505740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 93 - 152
Target Start/End: Original strand, 34693149 - 34693208
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggc 152  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||    
T  34693149 ggggcgtccctgagggggtgcaaacagctcaaacgagttgggcctccctcaaggatgggc 34693208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 93 - 152
Target Start/End: Original strand, 34715561 - 34715620
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggc 152  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||    
T  34715561 ggggcgtccctgagggggtgcaaacagctcaaacgagttgggcctccctcaaggatgggc 34715620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 93 - 152
Target Start/End: Original strand, 3399511 - 3399570
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggc 152  Q
    ||||||||| |||||||||||||| |||||||||||| ||| |||||| |||||||||||    
T  3399511 ggggcgtccttgagggggtgcaaacagctcaaacgagttggacctccctcaaggatgggc 3399570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 8907391 - 8907335
Alignment:
Q  95 ggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatggg 151  Q
    |||||||||||||||||||||| ||||||||| |||||| |||||| ||| ||||||    
T  8907391 ggcgtccctgagggggtgcaaacagctcaaacaagctggacctccctcaaagatggg 8907335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 138
Target Start/End: Complemental strand, 5952995 - 5952949
Alignment:
Q  91 ctggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctc 138  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||    
T  5952995 ctggggcgtccctgagggg-tgcaaacagctcaaacgagctgggcctc 5952949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 41213992 - 41213928
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaa 157  Q
    ||||| ||| |||||||||||||| |||| |||||||||||| ||||| | ||||||||| ||||    
T  41213992 ggggcatccttgagggggtgcaaacagcttaaacgagctgggtctccctcgaggatgggcctcaa 41213928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 97 - 140
Target Start/End: Complemental strand, 27507035 - 27506992
Alignment:
Q  97 cgtccctgagggggtgcaaatagctcaaacgagctgggcctccc 140  Q
    |||||||||||||||||||| |||||||  ||||||||||||||    
T  27507035 cgtccctgagggggtgcaaacagctcaacagagctgggcctccc 27506992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Original strand, 3155196 - 3155224
Alignment:
Q  177 ttgattttggtgttaggtgggggttcctc 205  Q
    |||||||||||||||||||||||||||||    
T  3155196 ttgattttggtgttaggtgggggttcctc 3155224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Original strand, 4505873 - 4505901
Alignment:
Q  177 ttgattttggtgttaggtgggggttcctc 205  Q
    |||||||||||||||||||||||||||||    
T  4505873 ttgattttggtgttaggtgggggttcctc 4505901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Original strand, 6964986 - 6965014
Alignment:
Q  177 ttgattttggtgttaggtgggggttcctc 205  Q
    |||||||||||||||||||||||||||||    
T  6964986 ttgattttggtgttaggtgggggttcctc 6965014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Complemental strand, 12337571 - 12337543
Alignment:
Q  177 ttgattttggtgttaggtgggggttcctc 205  Q
    |||||||||||||||||||||||||||||    
T  12337571 ttgattttggtgttaggtgggggttcctc 12337543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 26715940 - 26715980
Alignment:
Q  100 ccctgagggggtgcaaatagctcaaacgagctgggcctccc 140  Q
    ||||||||||||||||| |||||||  ||||||||||||||    
T  26715940 ccctgagggggtgcaaacagctcaacagagctgggcctccc 26715980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 20003940 - 20003839
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaagagtgggggttcctcataattgattttggtgttag 192  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  20003940 ggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggttcctcatgattgattttggtgttag 20003841  T
Q  193 gt 194  Q
    ||    
T  20003840 gt 20003839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 93 - 205
Target Start/End: Complemental strand, 37430365 - 37430253
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaagagtgggggttcctcataattgattttggtgttag 192  Q
    ||||||||| |||||||||||||| |||||||||||| ||||||| ||  |||||||||| ||||||||||||||||||||| ||||||||||||||||     
T  37430365 ggggcgtccttgagggggtgcaaacagctcaaacgagttgggccttccttaaggatgggcctcaagagtgggggttcctcatgattgattttggtgttac 37430266  T
Q  193 gtgggggttcctc 205  Q
    ||| |||||||||    
T  37430265 gtgagggttcctc 37430253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 93 - 152
Target Start/End: Complemental strand, 2952536 - 2952477
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggc 152  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  2952536 ggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggc 2952477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 93 - 152
Target Start/End: Complemental strand, 5861059 - 5861000
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggc 152  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  5861059 ggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggc 5861000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 93 - 152
Target Start/End: Original strand, 30883112 - 30883171
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggc 152  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||    
T  30883112 ggggcgtccctgagtgggtgcaaacagctcaaacgagctgggcctccctcaaggatgggc 30883171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 93 - 152
Target Start/End: Complemental strand, 3048837 - 3048778
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggc 152  Q
    |||||||  ||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  3048837 ggggcgtttctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggc 3048778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 45472201 - 45472257
Alignment:
Q  101 cctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaa 157  Q
    |||||||||||||||| ||||||| ||||||||||| ||||||||||||||| ||||    
T  45472201 cctgagggggtgcaaacagctcaaccgagctgggccacccccaaggatgggcctcaa 45472257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 41878167 - 41878223
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatg 149  Q
    ||||||||| |||||||||||||| |||||||||||| || ||||||| ||||||||    
T  41878167 ggggcgtccttgagggggtgcaaacagctcaaacgagttgagcctccctcaaggatg 41878223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 97 - 140
Target Start/End: Original strand, 42600590 - 42600633
Alignment:
Q  97 cgtccctgagggggtgcaaatagctcaaacgagctgggcctccc 140  Q
    |||||||||||||||||||| |||||||  ||||||||||||||    
T  42600590 cgtccctgagggggtgcaaacagctcaacagagctgggcctccc 42600633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Complemental strand, 2952344 - 2952316
Alignment:
Q  177 ttgattttggtgttaggtgggggttcctc 205  Q
    |||||||||||||||||||||||||||||    
T  2952344 ttgattttggtgttaggtgggggttcctc 2952316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Complemental strand, 13534809 - 13534781
Alignment:
Q  177 ttgattttggtgttaggtgggggttcctc 205  Q
    |||||||||||||||||||||||||||||    
T  13534809 ttgattttggtgttaggtgggggttcctc 13534781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Complemental strand, 13624349 - 13624321
Alignment:
Q  177 ttgattttggtgttaggtgggggttcctc 205  Q
    |||||||||||||||||||||||||||||    
T  13624349 ttgattttggtgttaggtgggggttcctc 13624321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Original strand, 30883309 - 30883337
Alignment:
Q  177 ttgattttggtgttaggtgggggttcctc 205  Q
    |||||||||||||||||||||||||||||    
T  30883309 ttgattttggtgttaggtgggggttcctc 30883337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 93 - 198
Target Start/End: Original strand, 37514560 - 37514665
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaagagtgggggttcctcataattgattttggtgttag 192  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||| |||||||||||||||||    
T  37514560 ggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctcctccaaggatgggcctcaagagtgggggtttctcatgattgattttggtgttag 37514659  T
Q  193 gtgggg 198  Q
    ||||||    
T  37514660 gtgggg 37514665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 105 - 201
Target Start/End: Original strand, 1105445 - 1105541
Alignment:
Q  105 agggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaagagtgggggttcctcataattgattttggtgttaggtgggggtt 201  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1105445 agggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggttcctcatgattgattttggtgttaggtgggggtt 1105541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 93 - 205
Target Start/End: Complemental strand, 5129047 - 5128936
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaagagtgggggttcctcataattgattttggtgttag 192  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||| ||| |||||||| |||||||||||| |||||||||||||||||    
T  5129047 ggggcgttcctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggataggcctcaagagt-ggggttcctcatgattgattttggtgttag 5128949  T
Q  193 gtgggggttcctc 205  Q
    |||| ||||||||    
T  5128948 gtggaggttcctc 5128936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 10431506 - 10431442
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaa 157  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||    
T  10431506 ggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 10431442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 93 - 205
Target Start/End: Original strand, 32915299 - 32915398
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaagagtgggggttcctcataattgattttggtgttag 192  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||             |||||||||||||| |||||| |||||||||||||||||    
T  32915299 ggggcgtccctgagggggtgcaaacagctcaaacgagttgggcctccc-------------tcaagagtgggggtccctcatgattgattttggtgttag 32915385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 93 - 152
Target Start/End: Original strand, 55255082 - 55255141
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggc 152  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  55255082 ggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggc 55255141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 93 - 157
Target Start/End: Original strand, 47127983 - 47128047
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaa 157  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||| ||||    
T  47127983 ggggcgtccctgagggggtgcaaacagcccaaacgagctgggcctccctcaaggatgggcctcaa 47128047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 94 - 157
Target Start/End: Original strand, 17679220 - 17679283
Alignment:
Q  94 gggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaa 157  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||| ||||    
T  17679220 gggcgtccctgagggggtgcaaacagctcaaacgagctgagcctccctcaaggatgggcctcaa 17679283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 45560768 - 45560704
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaa 157  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||| ||| ||||||| ||||    
T  45560768 ggggcgtccttgagggggtgcaaacagctcaaacgagctgggcctccctcaaagatgggcctcaa 45560704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 90 - 157
Target Start/End: Original strand, 13459783 - 13459850
Alignment:
Q  90 tctggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaa 157  Q
    |||||||||| |||||||||||||||| ||||||||||||||| |||||||  |||||||||| ||||    
T  13459783 tctggggcgttcctgagggggtgcaaacagctcaaacgagctgagcctcccttaaggatgggcctcaa 13459850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 94 - 157
Target Start/End: Original strand, 48208453 - 48208516
Alignment:
Q  94 gggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaa 157  Q
    |||| |||||||||||||||||| |||||||||||| |||||||||| ||||||||||| ||||    
T  48208453 gggcatccctgagggggtgcaaacagctcaaacgagttgggcctccctcaaggatgggcctcaa 48208516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 27596696 - 27596639
Alignment:
Q  100 ccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaa 157  Q
    |||||||||||||| || ||||||||||||||||||||||||| ||||||||| ||||    
T  27596696 ccctgagggggtgcgaacagctcaaacgagctgggcctcccccgaggatgggcctcaa 27596639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 9579516 - 9579469
Alignment:
Q  110 gtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaa 157  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  9579516 gtgcaaacagctcaaacgagctgggcctccctcaaggatgggcttcaa 9579469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 9585211 - 9585164
Alignment:
Q  110 gtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaa 157  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  9585211 gtgcaaacagctcaaacgagctgggcctccctcaaggatgggcttcaa 9585164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 157
Target Start/End: Complemental strand, 34769583 - 34769533
Alignment:
Q  107 ggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaa 157  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||| ||||    
T  34769583 ggggtgcaaatagctcaaacgagttgggcctccctcaaggatgggcctcaa 34769533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 54779450 - 54779500
Alignment:
Q  100 ccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgg 150  Q
    ||||||||| ||||||| ||||||| |||||||||||||||||||||||||    
T  54779450 ccctgagggagtgcaaacagctcaaccgagctgggcctcccccaaggatgg 54779500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 10978138 - 10978191
Alignment:
Q  85 tatgatctggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctc 138  Q
    ||||||| |||||||||||||| ||||||||| ||||||||||||||| |||||    
T  10978138 tatgatcaggggcgtccctgagagggtgcaaacagctcaaacgagctgcgcctc 10978191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 152
Target Start/End: Complemental strand, 38209891 - 38209846
Alignment:
Q  107 ggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggc 152  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||    
T  38209891 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggc 38209846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 23510963 - 23510922
Alignment:
Q  94 gggcgtccctgagggggtgcaaatagctcaaacgagctgggc 135  Q
    ||||||||||||||||||||||| ||||||||||| ||||||    
T  23510963 gggcgtccctgagggggtgcaaacagctcaaacgaactgggc 23510922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 157
Target Start/End: Complemental strand, 35780609 - 35780556
Alignment:
Q  104 gagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaa 157  Q
    ||||||||||||| ||||||| |||||||||||||||||| |||| ||| ||||    
T  35780609 gagggggtgcaaacagctcaaccgagctgggcctcccccacggataggcctcaa 35780556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 157
Target Start/End: Original strand, 19498322 - 19498379
Alignment:
Q  100 ccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgggcttcaa 157  Q
    |||||| ||||||||||||||||||  | ||||||||||||||||  |||||| ||||    
T  19498322 ccctgacggggtgcaaatagctcaacagtgctgggcctcccccaatcatgggcctcaa 19498379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Complemental strand, 9578761 - 9578733
Alignment:
Q  177 ttgattttggtgttaggtgggggttcctc 205  Q
    |||||||||||||||||||||||||||||    
T  9578761 ttgattttggtgttaggtgggggttcctc 9578733  T

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Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Original strand, 10978885 - 10978913
Alignment:
Q  177 ttgattttggtgttaggtgggggttcctc 205  Q
    |||||||||||||||||||||||||||||    
T  10978885 ttgattttggtgttaggtgggggttcctc 10978913  T

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Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Complemental strand, 23509920 - 23509892
Alignment:
Q  177 ttgattttggtgttaggtgggggttcctc 205  Q
    |||||||||||||||||||||||||||||    
T  23509920 ttgattttggtgttaggtgggggttcctc 23509892  T

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Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 24969251 - 24969291
Alignment:
Q  100 ccctgagggggtgcaaatagctcaaacgagctgggcctccc 140  Q
    ||||||||||||||||| |||||||  ||||||||||||||    
T  24969251 ccctgagggggtgcaaacagctcaacagagctgggcctccc 24969291  T

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Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Complemental strand, 34768696 - 34768668
Alignment:
Q  177 ttgattttggtgttaggtgggggttcctc 205  Q
    |||||||||||||||||||||||||||||    
T  34768696 ttgattttggtgttaggtgggggttcctc 34768668  T

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Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Complemental strand, 38209713 - 38209685
Alignment:
Q  177 ttgattttggtgttaggtgggggttcctc 205  Q
    |||||||||||||||||||||||||||||    
T  38209713 ttgattttggtgttaggtgggggttcctc 38209685  T

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Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Original strand, 47128972 - 47129000
Alignment:
Q  177 ttgattttggtgttaggtgggggttcctc 205  Q
    |||||||||||||||||||||||||||||    
T  47128972 ttgattttggtgttaggtgggggttcctc 47129000  T

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Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Original strand, 55255254 - 55255282
Alignment:
Q  177 ttgattttggtgttaggtgggggttcctc 205  Q
    |||||||||||||||||||||||||||||    
T  55255254 ttgattttggtgttaggtgggggttcctc 55255282  T

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Target: scaffold0001 (Bit Score: 57; Significance: 5e-24; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 129 - 205
Target Start/End: Original strand, 181851 - 181927
Alignment:
Q  129 gctgggcctcccccaaggatgggcttcaagagtgggggttcctcataattgattttggtgttaggtgggggttcctc 205  Q
    |||||||||||| ||||||||||  ||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  181851 gctgggcctccctcaaggatgggtctcaagagtgggggttcctcatgattgattttggtgttagatgggggttcctc 181927  T

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Target: scaffold0001; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 93 - 136
Target Start/End: Original strand, 181437 - 181480
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcc 136  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  181437 ggggcgtccctgagggggtgcaaacagctcaaacgagctgggcc 181480  T

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Target: scaffold0070 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 93 - 150
Target Start/End: Original strand, 1013 - 1070
Alignment:
Q  93 ggggcgtccctgagggggtgcaaatagctcaaacgagctgggcctcccccaaggatgg 150  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  1013 ggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgg 1070  T

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Target: scaffold0070; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Original strand, 1323 - 1351
Alignment:
Q  177 ttgattttggtgttaggtgggggttcctc 205  Q
    |||||||||||||||||||||||||||||    
T  1323 ttgattttggtgttaggtgggggttcctc 1351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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