View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8950_low_13 (Length: 583)
Name: NF8950_low_13
Description: NF8950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8950_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 1 - 563
Target Start/End: Original strand, 11623691 - 11624253
Alignment:
| Q |
1 |
tcaaacagaacaagcttagcacataaaataaaaacacctatttatagtgttacacaaaaagagacaaaattagttcccctttcttgtgctgagactacca |
100 |
Q |
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| T |
11623691 |
tcaaacagaacaagcttagcacataaaataaaaacacctatttatagtgttacacaaaaagagacaaaattagttcccctttcttgtgctgagactacca |
11623790 |
T |
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| Q |
101 |
accaaatgcacattggtgagaaagatggtcactgtctcaagagaagaagtgactaacctcaattctcaaacacaatacaaaaaggattatttcttattta |
200 |
Q |
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| T |
11623791 |
accaaatgcacattggtgagaaagatggtcactgtctcaagagaagaagtgactaacctcaattctcaaacacaatacaaaaaggattatttcttattta |
11623890 |
T |
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| Q |
201 |
agagttctcatggaaattaagtgatctagctaaagctgcagggttagccatcaacatcggagaggtttgaacatggtttttaccatctttctttgattga |
300 |
Q |
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| T |
11623891 |
agagttctcatggaaattaagcgatctagctaaagctgcagggttagccatcaacattggagaggtttgaacatggtttttaccatctttctttgattga |
11623990 |
T |
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| Q |
301 |
aaagccttagtcataccacctctactcaaaccttcattcttaattccaagtgtttcccaaattgaactctttgcagcttcggttggatcatcaattcgca |
400 |
Q |
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| T |
11623991 |
aaagccttagtcataccacctctactcaaaccttcattcttaattccaagtgtttcccaaattgaactctttgcagcttcggttggatcatcaattcgca |
11624090 |
T |
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| Q |
401 |
atgttttaggaaccaaaacacacccatttctttgttttggtgattcttctgtttgcaaatggtcttgtttagctatttcgtcgtcgttgttgtcatcgtc |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| | ||||||||||||| |
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| T |
11624091 |
atgttttaggaaccaaaacacacccatttctttgttttggtgattcttctgtttgcaaactgtcttgtttagcattttcgtcgttggtgttgtcatcgtc |
11624190 |
T |
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| Q |
501 |
cctcgagtgtttcccgagcgttggagatttcggactagatcttggagttgtcgcgggagtatg |
563 |
Q |
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| T |
11624191 |
cctcgagtgtttcccgagcgttggagatttcggactagatcttggagttgtcgcgggagtatg |
11624253 |
T |
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