View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8950_low_14 (Length: 581)
Name: NF8950_low_14
Description: NF8950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8950_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 37303904 - 37303467
Alignment:
| Q |
1 |
atcggttcctcctcgtcctctagaactcggcattggtggtttcggaggacaaccaggaatgggaggagatatgtatggagctggagatcttcttagatca |
100 |
Q |
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| T |
37303904 |
atcggttcctcctcgtcctctagaactcggcattggtggtttcggaggacaaccaggaatgggaggagatatgtatggagctggagatcttcttagatca |
37303805 |
T |
|
| Q |
101 |
ataagtggaccgaccgaagccgataaaccgatgataattgagctagctgttgctgctatggaggaactcattggaatggcacaaatgggtgatccacttt |
200 |
Q |
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| T |
37303804 |
ataagtggaccgaccgaagccgataaaccgatgataattgagctagctgttgctgctatggaggaactcattggaatggcacaaatgggtgatccacttt |
37303705 |
T |
|
| Q |
201 |
ggttgcctacacttgaaggaggttccatactcaatgaggaggaatatgttaggtcttttcctagaggaattggtccaaaaccagctggttttaaatgtga |
300 |
Q |
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| T |
37303704 |
ggttgcctacacttgaaggaggttccatactcaatgaggaggaatatgttaggtcttttcctagaggaattggtccaaaaccagctggttttaaatgtga |
37303605 |
T |
|
| Q |
301 |
agcttcaagagaatcttctgttgtcatcatgaatcatgttaaccttgttgagattctcatggatgtggtatacgcagacacaacctttacataattaaaa |
400 |
Q |
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| T |
37303604 |
agcttcaagagaatcttctgttgtcatcatgaatcatgttaaccttgttgagattctcatggatgtgg--tacgcagacacaacctttacataattaaaa |
37303507 |
T |
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| Q |
401 |
taatttcttatcttcataagtattagaacttatgcaacat |
440 |
Q |
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| T |
37303506 |
taatttcttatcttcataagtattagaacttatgcaacat |
37303467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 479 - 562
Target Start/End: Complemental strand, 37303428 - 37303345
Alignment:
| Q |
479 |
cttgtggtttataagaaccaatggtccacagttttttctggcattgtctcaagagcaatgacattggaagtgctatcaactggg |
562 |
Q |
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| T |
37303428 |
cttgtggtttataagaaccaatggtccacagttttttctggcattgtctcaagagcaatgacattggaagtgctatcaactggg |
37303345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 8e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 82 - 372
Target Start/End: Original strand, 16826099 - 16826395
Alignment:
| Q |
82 |
tggagatcttcttagatcaataagtggaccgaccgaagccgataaaccgatgataattgagctagctgttgctgctatggaggaactcattggaatggca |
181 |
Q |
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||||||| |||| || ||||| ||||| ||||||||||| || ||||| || ||||| || |||||||||| |||||||| || || ||||| ||||| |
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| T |
16826099 |
tggagatattctaaggtcaattagtgggccgaccgaagctgacaaaccaattataatagaattagctgttgcagctatggaagagcttattgggatggct |
16826198 |
T |
|
| Q |
182 |
caaatgggtgatccactttggttgc---ctacacttgaaggaggttcca---tactcaatgaggaggaatatgttaggtcttttcctagaggaattggtc |
275 |
Q |
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|||||||||||||| |||||| | |||||| |||||||| | | | | || ||||| || |||||||||||||| |||||| | || ||||| | |
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| T |
16826199 |
caaatgggtgatcctctttggctaagaactacacctgaaggagctgctaccgtgcttaatgaagatgaatatgttaggtcgtttcctcgtgggattggac |
16826298 |
T |
|
| Q |
276 |
caaaaccagctggttttaaatgtgaagcttcaagagaatcttctgttgtcatcatgaatcatgttaaccttgttgagattctcatggatgtggtata |
372 |
Q |
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| T |
16826299 |
ctaaacctaatggtttcaaatgtgaagcttcgagggaatctagcgttgttatcatgaatcatgtcaaccttgttgagattctcatggatgtggtata |
16826395 |
T |
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