View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8950_low_17 (Length: 569)
Name: NF8950_low_17
Description: NF8950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8950_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 437; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 11 - 554
Target Start/End: Original strand, 6326525 - 6327087
Alignment:
| Q |
11 |
cacagaccttaactaaattttggcagtttgatgtgattttctctggtttgagcacatcatggcctaagggactcaccggtttgagcccggttcggtttac |
110 |
Q |
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| T |
6326525 |
cacagaccttaactaaattttggcagtttgatgtgattttctctggtttgagcacatcatgacctaagggtctcaccggtttgagcccggtccggtttac |
6326624 |
T |
|
| Q |
111 |
aaaacatcaatgttttaataaacatgttagaacatcacaaaacagaaccaattaagttctgttttctactataagtttcagagattgaatcaaaaccagc |
210 |
Q |
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| T |
6326625 |
aaaacatcaacgttttaataaacatgttagaacatcacaaaacagaaccaattaagttctgttttctactataagtttcagagattgaatcaaaacctgc |
6326724 |
T |
|
| Q |
211 |
atatctaaaagaacacaggtcgaataacat-------------taaaagataactat--------ttatagcaatacttgttagacaaagaaactaaaca |
289 |
Q |
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| T |
6326725 |
atatctaaaagaatacaggtcgaataacatgtttgatcaacattaaaagataactatcatagttgttatagcaataattgttagacaaagaaactaaaca |
6326824 |
T |
|
| Q |
290 |
acatgctgaaaaagtaaagatactactactataaactcaaacataaaacacttttttcttagttcttgagaatgaaaagtgaaaatactagttctaagct |
389 |
Q |
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| T |
6326825 |
acatgctgaaaaagtaaagatactaatacta--aactaaaaaataaaacacttttttcttagttcttgagaatgaaaagtgaaaatactagttctaagct |
6326922 |
T |
|
| Q |
390 |
acataacataatagggacacatttcgtgacacttcttagccatctcgaggtctgcctcgacaacaccgacctttccatctccaacaggatattctatggt |
489 |
Q |
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| T |
6326923 |
acacaacataatagggacacatttcgtgacacttcttagccatctcgaggtctgcctcgacaacaccgacctttccatctccaacaggatattctatggt |
6327022 |
T |
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| Q |
490 |
gaattctgccactgagagtactgctttcaaatctttaagagaaggccagccaagaacaacattat |
554 |
Q |
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| T |
6327023 |
gaattctgccactgagagtactgctttcaaatctttaagagaaggccagccaagaacaacattat |
6327087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 362 - 553
Target Start/End: Original strand, 6317650 - 6317844
Alignment:
| Q |
362 |
tgaaaagtgaaaatactagttctaagctacataacataatagggacacatttcgtgacacttcttagccatctcgaggtctgcctcgacaacaccgacct |
461 |
Q |
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| T |
6317650 |
tgaaaagtgaaaatactagttcaaaactacataataaaatggggacacatatcgtgacacttcttggccgtctcaaggtctgcctcgacaacaccgacct |
6317749 |
T |
|
| Q |
462 |
ttccatctccaacaggatattctatggtgaattctgccactgaga---gtactgctttcaaatctttaagagaaggccagccaagaacaacatta |
553 |
Q |
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| T |
6317750 |
ttccatctccaatcgaatattctatggtgaggtctgcccatgagagtcgtacagcattcaaatctttaagtgcaggccagccaagaacaacatta |
6317844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 404 - 491
Target Start/End: Original strand, 6329927 - 6330014
Alignment:
| Q |
404 |
ggacacatttcgtgacacttcttagccatctcgaggtctgcctcgacaacaccgacctttccatctccaacaggatattctatggtga |
491 |
Q |
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| T |
6329927 |
ggacgcatttcgtaacacttcttagccatctcaagatctgccctaacaactccaacctttccatctccaagaggatatttcatggtga |
6330014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 146
Target Start/End: Original strand, 6317317 - 6317421
Alignment:
| Q |
32 |
ggcagtttgat-gtgattttctctggtttgagcacatcatggcctaagggactcaccggtttgagcccggttcggtttacaaaacatcaatgttttaata |
130 |
Q |
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| T |
6317317 |
ggcagtttgattgtgattttctctggtttgagcgcatcatgacccaagggtttcaccagtttg-----------gtatataaaacatcaatgttttaata |
6317405 |
T |
|
| Q |
131 |
aacatgttagaacatc |
146 |
Q |
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| T |
6317406 |
aacatgttagaacatc |
6317421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 418 - 482
Target Start/End: Original strand, 6309938 - 6310002
Alignment:
| Q |
418 |
acacttcttagccatctcgaggtctgcctcgacaacaccgacctttccatctccaacaggatatt |
482 |
Q |
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| T |
6309938 |
acactttttcgccatctcgaggtctgccttgacaagtccgaccattccatctccaataggatatt |
6310002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 227
Target Start/End: Original strand, 6317483 - 6317521
Alignment:
| Q |
189 |
cagagattgaatcaaaaccagcatatctaaaagaacaca |
227 |
Q |
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| T |
6317483 |
cagagattgaatcaaaacctgcatatctaaaagaacaca |
6317521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 131; Significance: 1e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 301 - 482
Target Start/End: Original strand, 39832535 - 39832713
Alignment:
| Q |
301 |
aagtaaagatactactactataaactcaaacataaaacacttttttcttagttcttgagaatgaaaagtgaaaatactagttctaagctacataacataa |
400 |
Q |
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| T |
39832535 |
aagtaaagatactacttcta--aactcaaacataaaacacttttttcttagttcttgagaatgaaaagtgaaaatactacttctaagctacataacataa |
39832632 |
T |
|
| Q |
401 |
tagggacacatttcgtgacacttcttagccatctcgaggtctgcctcgacaacaccgacctttccatctccaacaggatatt |
482 |
Q |
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| T |
39832633 |
aaggaacacatctcgtgacacttcttagccatctcaaggtctgcctcgacaacacc-acctttccatttccaacgggatatt |
39832713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 39832379 - 39832427
Alignment:
| Q |
190 |
agagattgaatcaaaaccagcatatctaaaagaacacaggtcgaataac |
238 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||| || ||||||| |
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| T |
39832379 |
agagattgaatcaaaacctgcatatctaaaagaacacaagtggaataac |
39832427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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