View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8950_low_19 (Length: 558)
Name: NF8950_low_19
Description: NF8950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8950_low_19 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 16 - 558
Target Start/End: Complemental strand, 4388537 - 4388003
Alignment:
| Q |
16 |
cactcttggtgtttctatcatgtttttcatgtagaatgctcttctttctatcatactttgcctaattgacaatttagtcgtcttcctcaacaattttgtc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
4388537 |
cactcttggtgtttctatcatgtttttcatgtagaatgctcttctttctatcatactttgcctaattgacaatttagttgtcttcctcaacaattttgcc |
4388438 |
T |
|
| Q |
116 |
atccaatctccttatagcttcctttgccaagtcatagatcccatgaagagtaaaccgaaacagtgacacttgctttattgttttttccttgagatgcatg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4388437 |
atccaatctccttatagcttcctttgccaagtcatagatcccatgaagagtaaaccgaaacagtgacacttgctttattgttttttccttgag----atg |
4388342 |
T |
|
| Q |
216 |
taagtattttcgtaagatttatgtgacataagcttggatgattattatcgataaacaaagcacaagttcgaattctggtgggaacaattctttgctaagc |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4388341 |
taagtattttcgtaagatttatgtgacataagcttggatgattattatcgataaacaaagcacaagtccgaattctggtgggaacaattctttgctaagc |
4388242 |
T |
|
| Q |
316 |
tttacttaactttcggtagaacttcttaattactaggagcccccttcccctaggaaccggaagcttaacacacnnnnnnnnnnttaaaattcttccgccc |
415 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4388241 |
tttacttaactttcggtagaacttcctaattactaggagcccccttcccctaggaaccggaagcttaacaca---aaaaaaaattaaaattcttccgccc |
4388145 |
T |
|
| Q |
416 |
accaaacacttctttgtgttttatgggtgcctcttttgttgatcctatcatctcatcaatgattgtgttgatttgtgtcgctctgccttcctttgtgact |
515 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4388144 |
accaaacacttctttgtgtgttatgggtgcctc-tttgttgatcctatcatctcatcaatgattgtgttgatttgtgtcgctctgccttcctttgtgact |
4388046 |
T |
|
| Q |
516 |
ccaatcaaacaatttgttgaatcatggagaaagcaaaacatag |
558 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4388045 |
ccaatcaaacaatttgtttaatcatggagaaagcaaaacatag |
4388003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University