View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8950_low_20 (Length: 557)
Name: NF8950_low_20
Description: NF8950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8950_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 225 - 539
Target Start/End: Original strand, 14569311 - 14569627
Alignment:
| Q |
225 |
gcattaccaagtgcaaggcatttctggtagcaagagtagtataaacatttccataaatagtagtaagtccaataacttcaacttctggtgatcttagagc |
324 |
Q |
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| T |
14569311 |
gcattaccaagtgcaaggcatttctggtagcaagagtagtataaacatttccataaatagtagtaagtccaataacttgaacttctggtgatcttagagc |
14569410 |
T |
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| Q |
325 |
aaggaatattgccatagcatcatctatagaaataaaaccaatcacaatattatgatcaaagtcaaagaaacatggaatttgaaaaatcaaacatagacaa |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14569411 |
aaggaatattgccatagcatcatctatagaaataaaaccaatcacaatattatgatcaaagtcaaagaaacatggaatttgaaaaatcaaacatagacaa |
14569510 |
T |
|
| Q |
425 |
agagc--nnnnnnnnnnnnngtatatgttgtgtattaattactaatatttaccgattccagggtcagtatcaattatgatcttctttggttccttttggg |
522 |
Q |
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||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14569511 |
agagcaaaaaaaaaaaaaaagtatatgttgtgtattaattgctattatttaccgattccagggtcagtatcaattatgatcttctttggttccttttggg |
14569610 |
T |
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| Q |
523 |
ttgccatatgatctgat |
539 |
Q |
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|||||| |||| |||| |
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| T |
14569611 |
ctgccatgtgatttgat |
14569627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 227 - 408
Target Start/End: Original strand, 14577656 - 14577842
Alignment:
| Q |
227 |
attaccaagtgcaaggcatttctggtagcaagagtagtataaacatttccataaatagtagtaagtccaataacttcaacttctggtgatcttagagcaa |
326 |
Q |
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| T |
14577656 |
attaccaaatgcaaagcatttctggtggcaagagtagtataaacatttccatagatagtagtaagtccaataacttgaacttctggtgatcttagagcaa |
14577755 |
T |
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| Q |
327 |
ggaatattgccatagcatcatct-----atagaaataaaaccaatcacaatattatgatcaaagtcaaagaaacatggaatttgaaa |
408 |
Q |
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| T |
14577756 |
gaaatattgccatagcatcatctgcacaaaaaaaaaataatcaattacaatattatgatcaaagtcaaagaaacatgaaatttgaaa |
14577842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 34 - 172
Target Start/End: Original strand, 14569125 - 14569264
Alignment:
| Q |
34 |
tttaccctattcggccaaaattgacctacgtctcggagagagagcagctctccaatcaactatcaacgagtctttacatgagatacacaag-cgttacaa |
132 |
Q |
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||||||||||||||| |||||||||||||||| | |||||||||| ||||||||| |||||||| |||||||||||||||||||||||| |||||||| |
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| T |
14569125 |
tttaccctattcggcttaaattgacctacgtctgcgggagagagcagttctccaatctactatcaatgagtctttacatgagatacacaagacgttacaa |
14569224 |
T |
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| Q |
133 |
aaaattagctctccaatacatagatttcaaggtacattag |
172 |
Q |
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| T |
14569225 |
gaaattagctctccaatacatagattttaaggtacattag |
14569264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 468 - 546
Target Start/End: Original strand, 14577883 - 14577961
Alignment:
| Q |
468 |
tatttaccgattccagggtcagtatcaattatgatcttctttggttccttttgggttgccatatgatctgattgatgat |
546 |
Q |
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|||||||||||||||||||| || || |||||||||||||||||||| |||| |||||||| |||| ||||||||||| |
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| T |
14577883 |
tatttaccgattccagggtcggtgtcgattatgatcttctttggttcggtttgagttgccatgtgatttgattgatgat |
14577961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 73 - 142
Target Start/End: Complemental strand, 6378708 - 6378639
Alignment:
| Q |
73 |
gagagcagctctccaatcaactatcaacgagtctttacatgagatacacaagcgttacaaaaaattagct |
142 |
Q |
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| T |
6378708 |
gagagcaactctctgatcaactacaaacgagtcttaacaagagatacacaatagttacaaaaaattagct |
6378639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 46311411 - 46311487
Alignment:
| Q |
43 |
ttcggccaaaattgacctacgtctcggagag--agagcagctctccaatcaactatcaacgagtctttacatgagat |
117 |
Q |
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|||||||||||||||||||||||| ||||| |||||| |||| |||| |||||||||| || |||||| ||||| |
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| T |
46311411 |
ttcggccaaaattgacctacgtctaagagagaaagagcaactctataatccactatcaacgggtttttacaagagat |
46311487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 71 - 142
Target Start/End: Complemental strand, 9765873 - 9765801
Alignment:
| Q |
71 |
gagagagcagctctccaatcaactatcaacgagtctttac-atgagatacacaagcgttacaaaaaattagct |
142 |
Q |
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|||||||||||||||||||| |||||||| |||| |||| | |||||||| | | ||||||| ||||||||| |
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| T |
9765873 |
gagagagcagctctccaatccactatcaatgagttcttacaaagagatacaaatgggttacaagaaattagct |
9765801 |
T |
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