View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8950_low_24 (Length: 522)
Name: NF8950_low_24
Description: NF8950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8950_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 176 - 507
Target Start/End: Complemental strand, 49876479 - 49876147
Alignment:
| Q |
176 |
ctacttaacttactcttgttttttagaatgataacttaacttacttgctggcaatttgttggattatgtagttagcgataactaacataataaactatat |
275 |
Q |
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| T |
49876479 |
ctacttaacttactcttgttttttagaatgataacttaacttacttgctggcaatttgttggattatgtagttagcgataactaacataataaactatat |
49876380 |
T |
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| Q |
276 |
atggtg-aagaatattagtttccacgtaaggaaatgtgttggttaatgataacttataacttccttgttggcaagttgttggattatgtatttagtttgt |
374 |
Q |
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| T |
49876379 |
atggtggaagaatattagtttccacgtaaggaaatgtgttggttaatgataacttataacttccttgttggcaagttgttggattatgtatttagtttgt |
49876280 |
T |
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| Q |
375 |
ataaatcaacatacatggatgtggatatgaatgatgacggaagtcccaaacattattagattagtagagattttcatttgttcaaattttgaactttcct |
474 |
Q |
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| T |
49876279 |
ataaatcaacatacatggatgtggatatgaatgatgacggaagtcccaaacattattagattagtagagattttcatttgttcaaattttgaactttcct |
49876180 |
T |
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| Q |
475 |
tctgtgctccaaactgtattactagtatttagt |
507 |
Q |
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| T |
49876179 |
tctgtgctccaaactgtattactagtatttagt |
49876147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 9 - 160
Target Start/End: Complemental strand, 49876665 - 49876516
Alignment:
| Q |
9 |
gcagagattgagagctattgaagaaggatgattctgaaggaaattgaagagatggttgattttgtgagtcacaggaacttgcacttgcatcatttttaga |
108 |
Q |
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| T |
49876665 |
gcagagattgagagctattgaagaaggatgattctgaaggaaattgaagagatggttgattttgtgagtcacaggaacttgcacttgcatcatttttaga |
49876566 |
T |
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| Q |
109 |
agaacaatggaatggaatggaaaggaaaataataataatggtgatgatgatg |
160 |
Q |
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| T |
49876565 |
agaacaatggaatggaaaggaaa--ataataataataatggtgatgatgatg |
49876516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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