View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8950_low_27 (Length: 512)
Name: NF8950_low_27
Description: NF8950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8950_low_27 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 512
Target Start/End: Complemental strand, 52730816 - 52730301
Alignment:
| Q |
1 |
ttaaattgtgtttgtggttataccgtgaaactattatattgttagaaaatgtggcggatataatcaaaatttatattgtggttgcaatgtcattgctaag |
100 |
Q |
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| T |
52730816 |
ttaaattgtgtttgtggttataccgtgaaactattatattgttagaaaatgtggcagatataatcaaaatttatattgtggttgcgatgtcattgctaag |
52730717 |
T |
|
| Q |
101 |
tcctcaaaatcgtttatattaagttgcaaaccgcaatttgaaaccagaaatattagtatgagtattgttttgttatattaaaagaaagaattgagaaccc |
200 |
Q |
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| T |
52730716 |
tcctcaaaatcgtttatattaagttgcaaaccgcaatttgaaaccagaaatattagtattagtattagt-----atattaaaagaaagaattgagaaccc |
52730622 |
T |
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| Q |
201 |
tagtcatgaagctattaattaagtacatatttaatacggtactatagttaagataaattttgcattacacaggattacagccaaccagggtttctatttg |
300 |
Q |
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|||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52730621 |
tagtaatgaagctattaattaagtacataattaatacggtaatatagttaagataaattttgcattacacaggattacagccaaccagggtttctatttg |
52730522 |
T |
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| Q |
301 |
cttggcttggacaacacatctccaacctttgcatcagctatacagaattctgtaccagccattacatttgtcatggcagtcatactcaggtaaataagca |
400 |
Q |
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| T |
52730521 |
cttggcttggacaacacatctccaacctttgcatcagctatacagaattctgtaccagccattacatttgtcatggcagtcatactcaggtaaataagct |
52730422 |
T |
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| Q |
401 |
agctagctag---------ccttaatttaattttaattcagtttgttaataattagtcgttaaaatttcagaatagaaaaggtgcggttgaacagaaagg |
491 |
Q |
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| T |
52730421 |
agctagctagctagctagcccttaatttaattttaattcagtttgttaataattagtcgttaaaatttcagaatagaaaaggtgcggttgaacagaaagg |
52730322 |
T |
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| Q |
492 |
atggaataggaaaggtggcag |
512 |
Q |
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| T |
52730321 |
atggaataggaaaggtggcag |
52730301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 269 - 386
Target Start/End: Complemental strand, 7369407 - 7369290
Alignment:
| Q |
269 |
acaggattacagccaaccagggtttctatttgcttggcttggacaacacatctccaacctttgcatcagctatacagaattctgtaccagccattacatt |
368 |
Q |
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||||||||||||| || || |||||||| |||||||| ||||| |||||||| || |||||||||||||| |||||||||||||| || ||||||||||| |
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| T |
7369407 |
acaggattacagcaaatcaaggtttctacttgcttgggttggataacacatcccctacctttgcatcagcaatacagaattctgtccctgccattacatt |
7369308 |
T |
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| Q |
369 |
tgtcatggcagtcatact |
386 |
Q |
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| T |
7369307 |
tctcatggcagtcatact |
7369290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 307 - 377
Target Start/End: Original strand, 8124557 - 8124627
Alignment:
| Q |
307 |
ttggacaacacatctccaacctttgcatcagctatacagaattctgtaccagccattacatttgtcatggc |
377 |
Q |
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|||||||||||||| ||||| ||||| || ||||| || |||||||| |||||| |||| ||| ||||||| |
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| T |
8124557 |
ttggacaacacatcaccaacatttgcttctgctatgcaaaattctgttccagcccttacctttctcatggc |
8124627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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