View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8950_low_28 (Length: 511)
Name: NF8950_low_28
Description: NF8950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8950_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Complemental strand, 4670445 - 4669923
Alignment:
| Q |
1 |
ctgcactactatagaaaacattgtgatggtatcgttaatagtataagttgttgttggaataaaggtgagttttttgatgaaattgagagaaaa------- |
93 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4670445 |
ctgcactactatagaaaacattgtgatggtatcgtttatagtataagttgttgttggaataaaggtgagttttttgatgaaattgagagaaaagagtaga |
4670346 |
T |
|
| Q |
94 |
-------aggatgagattagagagattatgtgattgagagtaatggaaagtgcttttgcttttcaatatatgatttcaattacaattggacatacaagag |
186 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4670345 |
gagaaaaaggatgagattagagagattatgtgattgagagtaatggaaagtgcttttgcttttcaatatatgatttcaattacaattggacatacaagag |
4670246 |
T |
|
| Q |
187 |
tttatgttatttatatagcata--gtttgttacacttggttaattcacaagcaagcaatcctataacaaacttgttaactaattaaactaaacataacaa |
284 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4670245 |
tttatgttatttatatagcatatagtttgttacacttggttacttcacaagcaagcaatcctataacaaacttgttaactaattaaactaaacataacaa |
4670146 |
T |
|
| Q |
285 |
acagaattatattctaatagttgtgagaatgtggtgtctaactatatggtcggtaaattagagcttccaaaccaaaatcatccatatctatgcaaattac |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4670145 |
acagaattatattctaatagttgtgagaatgtggtgtctaactatatggtcgataaattagagcttccaaaccaaaatcatccatatctatgcaaattac |
4670046 |
T |
|
| Q |
385 |
aatgacttaacaaagttagtgaagtg---------aaatgttctctagtgagcttttcgactggtccaaaatatcaagatgcatat-gatgccattccta |
474 |
Q |
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| T |
4670045 |
aatgacttaacaaagttagtgaagtgaaagtcactaaatgttgtctagtgagcttttcgactagtccaaaatatcaagatacatatggatgccattccta |
4669946 |
T |
|
| Q |
475 |
tctatgcatgacaccttgtactt |
497 |
Q |
| |
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| T |
4669945 |
tcgatgcatgacaccttgtactt |
4669923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 85 - 301
Target Start/End: Complemental strand, 36360438 - 36360203
Alignment:
| Q |
85 |
gagagaaaaaggatgagattagagagattatgtgattgagagtaatggaaagtgcttttgcttttcaatata-------tgatttcaattacaattggac |
177 |
Q |
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||||||||| ||||| ||||||| |||||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||||| ||||| | |
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| T |
36360438 |
gagagaaaagggatgggattagaaagattatgtgattgagagtaatggaaagtgtttttgattctcaatataatatatatgatttcaattactattgggc |
36360339 |
T |
|
| Q |
178 |
atacaagagtttatgttatttatatagcatagtttgttacacttggttaattcacaagcaagcaatcctataacaaac------------ttgttaacta |
265 |
Q |
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|||||| ||| ||| | ||||||||||||| |||||||||||| |||| |||||||||||||||||| ||||||||| |||||||||| |
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| T |
36360338 |
atacaatagtctatactttttatatagcatactttgttacacttagttacttcacaagcaagcaatcccataacaaactcataacaacctttgttaacta |
36360239 |
T |
|
| Q |
266 |
attaaactaaacataacaaacagaattatattctaa |
301 |
Q |
| |
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| |||||||||| |||||||| |||||||||||||| |
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| T |
36360238 |
actaaactaaacttaacaaactgaattatattctaa |
36360203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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