View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8950_low_3 (Length: 798)
Name: NF8950_low_3
Description: NF8950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8950_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 104 - 560
Target Start/End: Complemental strand, 46965961 - 46965507
Alignment:
| Q |
104 |
ctctctttgtaa-ctatttgaattgattaaggcacaagtgcttggtaatcgtggaaatatttaatagatcaagaataagtagtagagaaaccagcttcga |
202 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||| |
|
|
| T |
46965961 |
ctctctttgtaaactatttgaattgattaaggcacaagtgcttggtaatcgtggaaatatttaatagatcaagaatgagtagtagagaaaccaactccga |
46965862 |
T |
|
| Q |
203 |
tttcacaccatttttctaaatatattcatcatttacctaagccaagtaataacccgtgaaaaccctctaaaaatgtgtgtattgtatataccttgattca |
302 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
46965861 |
tttcacaccatttttctaaatatattcaccatttacctaagccaagtaataacccgtgaaaaccctctaaaaatgtgtgtattgtata--ccttgattca |
46965764 |
T |
|
| Q |
303 |
catttaggatactttcaagttgtatcatcaagtggcatgtgcatgtcaaccggagggaatatcattattcaatgtttaaaaagtaggtttaggtagaaaa |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
46965763 |
catttaggatactttcaagttgtatcatcacgtggcatgtgcatgtcaaccggagagaatatcattattcaatgtttaaaa-gtaggtttaggtagaaaa |
46965665 |
T |
|
| Q |
403 |
agaccatgctataattttcatcaatatgatactttctatggaccgattgacttaaactacggaggaccatactattatgaacaaaaaatgcaaaagacgc |
502 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46965664 |
agaccatgctataattttcatcaatatgatactttctatggaccgattgacttaaactatggaggaccatactattatgaacaaaaaatgcaaaagacgc |
46965565 |
T |
|
| Q |
503 |
cggtaattgcatcactaaagaggtaaaattcttttatggtatttcttgtcattgagta |
560 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46965564 |
cggtaattgcatcactaaagaggtaaaattcttttatggtatttcttgtcattgagta |
46965507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 691 - 783
Target Start/End: Complemental strand, 46962811 - 46962719
Alignment:
| Q |
691 |
ttaggacatttaaggatagccaatgaatatttgataatatgttattatatgtcttttaactgcaactataaacacattactttgttagttatt |
783 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
46962811 |
ttaggacatttaaggatagccaatgaatatttgataatatgttattatatgtcttttaactacaactataaacacattactttgttagttatt |
46962719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 6e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 253 - 403
Target Start/End: Original strand, 17837829 - 17837979
Alignment:
| Q |
253 |
aacccgtgaaaaccctctaaaaatgtgtgtattgtatataccttgattcacatttaggatactttcaagttgtatcatcaagtggcatgtgcatgtcaac |
352 |
Q |
| |
|
||||| ||||| |||||||| |||||||||||||||||||| |||||||||||||| |||||||||| | | || |||||||||||||||||| || |
|
|
| T |
17837829 |
aacccatgaaagccctctaataatgtgtgtattgtatatactttgattcacatttaaaatactttcaaatattccgattaagtggcatgtgcatgtcgac |
17837928 |
T |
|
| Q |
353 |
cggagggaatatcattattcaatgtttaaaaagtaggtttaggtagaaaaa |
403 |
Q |
| |
|
| ||| |||| |||||||||||||||| ||||| ||||| ||||||||| |
|
|
| T |
17837929 |
cagagagaattctattattcaatgtttaagaagtaagtttaagtagaaaaa |
17837979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 265 - 405
Target Start/End: Complemental strand, 26613046 - 26612905
Alignment:
| Q |
265 |
ccctctaaaaatgtgtgtat--tgtatataccttgattcacatttaggatactttcaagttgtatcatcaagtggcatgtgcatgtcaaccggagggaat |
362 |
Q |
| |
|
|||||||||| ||||||||| ||||| ||| ||||||| ||||| || || |||| |||||| |||||||||||||||||||| || ||| |||| |
|
|
| T |
26613046 |
ccctctaaaagtgtgtgtatattgtatgtactttgattcttgtttagaatgctctcaaattgtatggtcaagtggcatgtgcatgtcgacaagagagaat |
26612947 |
T |
|
| Q |
363 |
atcattattcaatgtttaaaaagtaggtttaggtagaaaaaga |
405 |
Q |
| |
|
| || | ||||||||||| |||||||||||| |||||||||| |
|
|
| T |
26612946 |
a-caagactcaatgtttaagaagtaggtttagttagaaaaaga |
26612905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 319 - 378
Target Start/End: Original strand, 12568893 - 12568952
Alignment:
| Q |
319 |
aagttgtatcatcaagtggcatgtgcatgtcaaccggagggaatatcattattcaatgtt |
378 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||| || ||||| |||||||||||||| |
|
|
| T |
12568893 |
aagttgtatggtcaagtggcatgtgcatgtcgaccgaagagaataccattattcaatgtt |
12568952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University