View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8950_low_39 (Length: 430)
Name: NF8950_low_39
Description: NF8950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8950_low_39 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 35066514 - 35066928
Alignment:
| Q |
1 |
taggaaatttgtcaaggggtagagacacgggtacgcctgagaaaatatattttaagagatttgggtatgacaagggttaagacgagggttaacccttgga |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35066514 |
taggaaatttgtcagggggtagagacacgggtacgcctgagaaaatatattttaagagatttgggtatgacaagggttaagacgagggttaacccttgga |
35066613 |
T |
|
| Q |
101 |
aaacatatttgaacctctaagaaatttgaggcagaaaacctccctccatttcaaatttgtttgaaactgagtgatgtaacacaacacatgggttgtcagt |
200 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35066614 |
aaacatacttgaacctctgagaaatttgaggcagaaaacctccctccatttcaaatttgtttgaaactgagtgatgtaacacaacacatgggttgtcagt |
35066713 |
T |
|
| Q |
201 |
gttttgccagggcctaaaccagggattgtcccctgcaaatggagagagaatctttgcacccatgaaaatgaagagatatttgtttggttgttaagtactt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35066714 |
gttttgccagggcctaaaccagggattgccctcggcaaatggagagagaatctttgcacccatgaaaatgaagagatatttgtttggttgttaagtactt |
35066813 |
T |
|
| Q |
301 |
gattagaagcaacaggcgggggtttgtcctaaaactattgtcacaaatcaagacagtgctatcaaaatgcaatggcaagggtgtttccataggttaatta |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35066814 |
gattagaagcaacaggcgggggtttgtcctaaaactattgtcacaaatcaagacactgctatcaaaatgcaatggcaagggtgtttccataggttaatta |
35066913 |
T |
|
| Q |
401 |
acattactgtatgtt |
415 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
35066914 |
acattactgtatgtt |
35066928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 398
Target Start/End: Complemental strand, 44885406 - 44885287
Alignment:
| Q |
279 |
tttgtttggttgttaagtacttgattagaagcaacaggcgggggtttgtcctaaaactattgtcacaaatcaagacagtgctatcaa-aatgcaatggca |
377 |
Q |
| |
|
|||| ||||||| |||||||||| |||||||||| | |||| |||| ||||||||| || ||||| | ||| ||| |||||||| |||||| | ||| |
|
|
| T |
44885406 |
tttgattggttgctaagtacttggttagaagcaatgagtgggg-tttgccctaaaactgttatcacagaccaacacactgctatcaccaatgcagttgca |
44885308 |
T |
|
| Q |
378 |
agggtgtttccataggttaat |
398 |
Q |
| |
|
|||||||||||| |||||||| |
|
|
| T |
44885307 |
agggtgtttccaaaggttaat |
44885287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 355
Target Start/End: Original strand, 64622 - 64714
Alignment:
| Q |
262 |
atgaaaatgaagagatatttgtttggttgttaagtacttgattagaagcaacaggcgggggtttgtcctaaaactattgtcacaaatcaagaca |
355 |
Q |
| |
|
|||||| |||||||| |||||||||||| || ||||||| |||||||||| || || ||| |||||||||||||| |||| ||||||||| |
|
|
| T |
64622 |
atgaaactgaagagagttttgtttggttgctacgtacttggttagaagcaa-tggatggagttagtcctaaaactattatcactgatcaagaca |
64714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 414
Target Start/End: Original strand, 22639297 - 22639421
Alignment:
| Q |
290 |
gttaagtacttgattagaagcaacaggcgggggtttgtcctaaaactattgtcacaaatcaagacagtgctatca-aaatgcaatggcaagggtgtttcc |
388 |
Q |
| |
|
||||| |||||| |||||||||| | | ||||| ||||||||||||||| ||||| | || | ||||||||||| |||||| | ||||| |||||||| |
|
|
| T |
22639297 |
gttaaatacttggttagaagcaat-gtccggggtatgtcctaaaactattatcacataccaggccagtgctatcactaatgcagttgcaagagtgtttcc |
22639395 |
T |
|
| Q |
389 |
ataggttaattaacattactgtatgt |
414 |
Q |
| |
|
| |||||| | ||||||||||||| |
|
|
| T |
22639396 |
gaatgttaatcatcattactgtatgt |
22639421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 355
Target Start/End: Original strand, 16080985 - 16081077
Alignment:
| Q |
262 |
atgaaaatgaagagatatttgtttggttgttaagtacttgattagaagcaacaggcgggggtttgtcctaaaactattgtcacaaatcaagaca |
355 |
Q |
| |
|
|||||| |||||||| |||||||||||| || ||||||| |||||||||| || || ||| |||||||||||||| |||| ||||||||| |
|
|
| T |
16080985 |
atgaaactgaagagagttttgtttggttgctacgtacttggttagaagcaa-tggatggagttagtcctaaaactattatcactgatcaagaca |
16081077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University