View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8950_low_4 (Length: 791)

Name: NF8950_low_4
Description: NF8950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8950_low_4
NF8950_low_4
[»] chr7 (5 HSPs)
chr7 (7-520)||(12543514-12544029)
chr7 (587-645)||(12543375-12543433)
chr7 (722-777)||(7744645-7744700)
chr7 (720-769)||(12543251-12543300)
chr7 (583-645)||(7744506-7744568)
[»] chr3 (2 HSPs)
chr3 (55-184)||(53018277-53018406)
chr3 (591-645)||(53281561-53281616)
[»] chr1 (4 HSPs)
chr1 (46-183)||(16501803-16501940)
chr1 (94-159)||(23723477-23723542)
chr1 (38-111)||(24432975-24433048)
chr1 (38-111)||(24430928-24431001)
[»] chr8 (2 HSPs)
chr8 (591-645)||(1080879-1080933)
chr8 (587-645)||(24917449-24917507)
[»] chr5 (3 HSPs)
chr5 (587-640)||(11893735-11893788)
chr5 (587-640)||(28086278-28086331)
chr5 (94-145)||(24658228-24658279)
[»] chr2 (1 HSPs)
chr2 (587-640)||(562179-562232)
[»] chr6 (4 HSPs)
chr6 (599-645)||(15339447-15339493)
chr6 (38-111)||(17452024-17452097)
chr6 (587-640)||(33846143-33846196)
chr6 (587-640)||(33847182-33847235)


Alignment Details
Target: chr7 (Bit Score: 481; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 7 - 520
Target Start/End: Complemental strand, 12544029 - 12543514
Alignment:
Q  7 atggacatcataagttgtaagtatagactcggaagaattgggacgaggttgattcatattctgatcagatcgtcgaggacgagtgaaacaattatgaatc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12544029 atggacatcataagttgtaagtatagactcggaagaattgggacgagattgattcatattctgatcagatcgtcgaggacgagtgaaacaattatgaatc 12543930  T
Q  107 aagtgtccgactgtcatacaatatcgacaacaatttgaaataatatgaccctttttcaaacaattatagcattcaacagtgaacaatcgaagaaagaatg 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  12543929 aagtgtccgactgtcatacaatatcgacaacaatttgaaataatatgaccctttttcaaacaattatagcattcagcagtgaacaatcgaagaaagaatg 12543830  T
Q  207 cccaagctaacatcaatgacggcaaaatttggtagtcgatacaacactgaatttctccattaaaacataataaggttcaataaggattgagaaacataca 306  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12543829 cccaagctaacaacaatgacggcaaaatttggtagtcgatacaacactgaatttctccattaaaacataataaggttcaataaggattgagaaacataca 12543730  T
Q  307 ataaacaccaccaccgctaagccatatttgctggaaacaaaaattgtataaaatagaaggatctcatccaaatattacatgaaggaacacattgtaacaa 406  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12543729 ataaacaccaccaccgataagccatatttgctggaaacaaaaattgtataaaatagaaggatctcatccaaatattacatgaaggaacacattgtaacaa 12543630  T
Q  407 agggaattaagtgccttaaaatttgaaatgacagctggagaaaagtaccgaacaa--gatatgccggagccttaagcaaactgatgaatatataactact 504  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||     
T  12543629 agggaattaagtgccttaaaatttgaaatgacagctggagaaaagtaccgaacaagggatatggcggagccttaagcaaactgatgaatatataactacc 12543530  T
Q  505 ggtggatagaggcgct 520  Q
    ||||||||||||||||    
T  12543529 ggtggatagaggcgct 12543514  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 587 - 645
Target Start/End: Complemental strand, 12543433 - 12543375
Alignment:
Q  587 catgtacacccccatatacaacccttatgtggcatgggtattttggaaatttcaaacag 645  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12543433 catgtacacccccatatacaacccttatgtggcatgggtattttggaaatttcaaacag 12543375  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 722 - 777
Target Start/End: Original strand, 7744645 - 7744700
Alignment:
Q  722 caccaccactggctgccgctacattcttgcccttcgccccacccctctctttgatg 777  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7744645 caccaccactggctgccgctgcattcttgcccttcgccccacccctctctttgatg 7744700  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 720 - 769
Target Start/End: Complemental strand, 12543300 - 12543251
Alignment:
Q  720 gccaccaccactggctgccgctacattcttgcccttcgccccacccctct 769  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12543300 gccaccaccactggctgccgctacattcttgcccttcgccccacccctct 12543251  T

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Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 583 - 645
Target Start/End: Original strand, 7744506 - 7744568
Alignment:
Q  583 gatccatgtacacccccatatacaacccttatgtggcatgggtattttggaaatttcaaacag 645  Q
    |||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||    
T  7744506 gatctatgtacaccccaatatacaccccttatgtggcatgggtattttggaaatttcacacag 7744568  T

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Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 55 - 184
Target Start/End: Original strand, 53018277 - 53018406
Alignment:
Q  55 ttgattcatattctgatcagatcgtcgaggacgagtgaaacaattatgaatcaagtgtccgactgtcatacaatatcgacaacaatttgaaataatatga 154  Q
    |||||||  ||| |||||||| ||| |||||||||||| |||||| ||||||||||| ||| ||||| | || |||||||||||||||||| ||||||||    
T  53018277 ttgattccgattttgatcagaccgtggaggacgagtgagacaattttgaatcaagtgaccggctgtcttgcagtatcgacaacaatttgaagtaatatga 53018376  T
Q  155 ccctttttcaaacaattatagcattcaaca 184  Q
    ||||||||||  || ||||| |||||||||    
T  53018377 ccctttttcatgcagttataacattcaaca 53018406  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 591 - 645
Target Start/End: Complemental strand, 53281616 - 53281561
Alignment:
Q  591 tacacccccatatacaaccc-ttatgtggcatgggtattttggaaatttcaaacag 645  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||    
T  53281616 tacacccccatatacacccccttatgtggcatgggtattttggaaatttcacacag 53281561  T

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Target: chr1 (Bit Score: 58; Significance: 6e-24; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 46 - 183
Target Start/End: Complemental strand, 16501940 - 16501803
Alignment:
Q  46 gggacgaggttgattcatattctgatcagatcgtcgaggacgagtgaaacaattatgaatcaagtgtccgactgtcatacaatatcgacaacaatttgaa 145  Q
    ||||||| |||||||| |||| |||||| ||||| ||||| |||||  |||||| |||||||| |||  | ||||| | || ||||||||||||||||||    
T  16501940 gggacgaagttgattcctattttgatcaaatcgtggaggatgagtgggacaattttgaatcaaatgtttggctgtcttgcagtatcgacaacaatttgaa 16501841  T
Q  146 ataatatgaccctttttcaaacaattatagcattcaac 183  Q
      |||||||||||||||||| |||||||| ||||||||    
T  16501840 gcaatatgaccctttttcaagcaattataacattcaac 16501803  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 159
Target Start/End: Complemental strand, 23723542 - 23723477
Alignment:
Q  94 acaattatgaatcaagtgtccgactgtcatacaatatcgacaacaatttgaaataatatgaccctt 159  Q
    |||||| ||||||||||||||||||||| |||||||| | ||||||||||||  ||||||||||||    
T  23723542 acaattttgaatcaagtgtccgactgtcttacaatattggcaacaatttgaagaaatatgaccctt 23723477  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 111
Target Start/End: Original strand, 24432975 - 24433048
Alignment:
Q  38 gaagaattgggacgaggttgattcatattctgatcagatcgtcgaggacgagtgaaacaattatgaatcaagtg 111  Q
    |||||||| ||||||||||||||| | ||||||| || |||| |||||||||||   ||||| |||||||||||    
T  24432975 gaagaattaggacgaggttgattcttgttctgattaggtcgtggaggacgagtggggcaattttgaatcaagtg 24433048  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 24431001 - 24430928
Alignment:
Q  38 gaagaattgggacgaggttgattcatattctgatcagatcgtcgaggacgagtgaaacaattatgaatcaagtg 111  Q
    |||||||| ||||||||||||||| | ||||||| || |||| ||||| |||||   ||||| |||||||||||    
T  24431001 gaagaattaggacgaggttgattcttgttctgattaggtcgtggaggaagagtggggcaattttgaatcaagtg 24430928  T

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Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 591 - 645
Target Start/End: Original strand, 1080879 - 1080933
Alignment:
Q  591 tacacccccatatacaacccttatgtggcatgggtattttggaaatttcaaacag 645  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  1080879 tacacccccatatacaccccttatgtggcatgggtattttggaaatttcacacag 1080933  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 587 - 645
Target Start/End: Original strand, 24917449 - 24917507
Alignment:
Q  587 catgtacacccccatatacaacccttatgtggcatgggtattttggaaatttcaaacag 645  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  24917449 catgtacatccccatatacaccccttatgtggcatgggtattttggaaatttcacacag 24917507  T

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Target: chr5 (Bit Score: 46; Significance: 8e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 587 - 640
Target Start/End: Original strand, 11893735 - 11893788
Alignment:
Q  587 catgtacacccccatatacaacccttatgtggcatgggtattttggaaatttca 640  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  11893735 catgtacaccctcatatacaccccttatgtggcatgggtattttggaaatttca 11893788  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 587 - 640
Target Start/End: Complemental strand, 28086331 - 28086278
Alignment:
Q  587 catgtacacccccatatacaacccttatgtggcatgggtattttggaaatttca 640  Q
    ||||||||||  |||||||| ||||||||||||||||||||||| |||||||||    
T  28086331 catgtacaccttcatatacaccccttatgtggcatgggtattttagaaatttca 28086278  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 94 - 145
Target Start/End: Complemental strand, 24658279 - 24658228
Alignment:
Q  94 acaattatgaatcaagtgtccgactgtcatacaatatcgacaacaatttgaa 145  Q
    |||||| ||||||||||| || |||||| |||||||||||||||||||||||    
T  24658279 acaattttgaatcaagtgcccaactgtcttacaatatcgacaacaatttgaa 24658228  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 587 - 640
Target Start/End: Original strand, 562179 - 562232
Alignment:
Q  587 catgtacacccccatatacaacccttatgtggcatgggtattttggaaatttca 640  Q
    ||||||||||  |||||||| ||||||||||||||||||||||| |||||||||    
T  562179 catgtacaccttcatatacaccccttatgtggcatgggtattttagaaatttca 562232  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 599 - 645
Target Start/End: Original strand, 15339447 - 15339493
Alignment:
Q  599 catatacaacccttatgtggcatgggtattttggaaatttcaaacag 645  Q
    |||||||| || |||||||||||||||||||||||||||||| ||||    
T  15339447 catatacacccgttatgtggcatgggtattttggaaatttcacacag 15339493  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 111
Target Start/End: Original strand, 17452024 - 17452097
Alignment:
Q  38 gaagaattgggacgaggttgattcatattctgatcagatcgtcgaggacgagtgaaacaattatgaatcaagtg 111  Q
    |||||||| ||||||||||||||| | ||||||| || |||| |||||||||||   ||||| |||||||||||    
T  17452024 gaagaattaggacgaggttgattcttgttctgattaggtcgtggaggacgagtggggcaattttgaatcaagtg 17452097  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 587 - 640
Target Start/End: Original strand, 33846143 - 33846196
Alignment:
Q  587 catgtacacccccatatacaacccttatgtggcatgggtattttggaaatttca 640  Q
    ||||||||||  |||||||| | ||||||||||||||||||||| |||||||||    
T  33846143 catgtacaccttcatatacacctcttatgtggcatgggtattttagaaatttca 33846196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 587 - 640
Target Start/End: Complemental strand, 33847235 - 33847182
Alignment:
Q  587 catgtacacccccatatacaacccttatgtggcatgggtattttggaaatttca 640  Q
    ||||||||||  |||||||| | ||||||||||||||||||||| |||||||||    
T  33847235 catgtacaccttcatatacacctcttatgtggcatgggtattttagaaatttca 33847182  T

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