View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8950_low_43 (Length: 405)
Name: NF8950_low_43
Description: NF8950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8950_low_43 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 19 - 385
Target Start/End: Complemental strand, 43461282 - 43460915
Alignment:
| Q |
19 |
gttagcttatgttcctgttctttgattttcttgtgttctttcctcccaacaatctagactaataaccaacacgctagattaaagttccctttttgatggt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43461282 |
gttagcttatgttcctgttctttgattttcttgtgtgctttcctcccaacaatctagactaataaccaacacgctagattaaagttccctttttgatggt |
43461183 |
T |
|
| Q |
119 |
tttgataatttcattctatcaaaattgaaaatccatatttatctctcaaattaact-tgtaactnnnnnnnntatgtttcttaaattaatcataatttgt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||| |
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|
| T |
43461182 |
tttgataatttcattctatcaaaattgaaaatccatatttatctctcaaattaactctctaactaaaaaaaatatgtttcttaaattaatcataatttgt |
43461083 |
T |
|
| Q |
218 |
gtaaatgaaattggataaatctccttatcaacttggtcttccaccataaacatgaagaagcttcctttgaactataaacgtgaagcttcctaaacaaaaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43461082 |
gtaaatgaaattggataaatctccttatcaacttggtcttccaccataaacatgaagaagcttcctttgaactataaacgtgaagcttcctaaacaaaaa |
43460983 |
T |
|
| Q |
318 |
caattatccatagcttcaaagggcatataataggacatagatctgaagccttgaaatttcaatttcaa |
385 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43460982 |
caattatccatagcttcaaagggcatatcataggacatagatctgaagccttgaaatttcaatttcaa |
43460915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 19 - 385
Target Start/End: Complemental strand, 26341227 - 26340860
Alignment:
| Q |
19 |
gttagcttatgttcctgttctttgattttcttgtgttctttcctcccaacaatctagactaataaccaacacgctagattaaagttccctttttgatggt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
26341227 |
gttagcttatgttcctgttctttgattttcttgtgtgctttcctcccaacaatctagactaataaccaacacgctagatgaaagttccctttttgatggt |
26341128 |
T |
|
| Q |
119 |
tttgataatttcattctatcaaaattgaaaatccatatttatctctcaaattaact-tgtaactnnnnnnnntatgtttcttaaattaatcataatttgt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||| |
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|
| T |
26341127 |
tttgataatttcattctatcaaaattgaaaattcatatttatctctcaaattaactctgtaactaaaaaaaatatgtttctttaattaatcataatttgt |
26341028 |
T |
|
| Q |
218 |
gtaaatgaaattggataaatctccttatcaacttggtcttccaccataaacatgaagaagcttcctttgaactataaacgtgaagcttcctaaacaaaaa |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
26341027 |
gtaaatgaaattggataaatctccttatcaatttggtcttccaccataaacatgaagaagcttcttttgaactataaacgtgaagcttcctaaacaaaaa |
26340928 |
T |
|
| Q |
318 |
caattatccatagcttcaaagggcatataataggacatagatctgaagccttgaaatttcaatttcaa |
385 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26340927 |
caattatccatagcttcaaagggcatatcataggacatagatctgaagccttgaaatttcaatttcaa |
26340860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 19 - 385
Target Start/End: Complemental strand, 12698000 - 12697633
Alignment:
| Q |
19 |
gttagcttatgttcctgttctttgattttcttgtgttctttcctcccaacaatctagactaataaccaacacgctagattaaagttccctttttgatggt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12698000 |
gttagcttatgttcctgttctttgattttcttgtgtgctttcctcccaacaatctagactaataaccaacacgctagattaaagttccctttttgatggt |
12697901 |
T |
|
| Q |
119 |
tttgataatttcattctatcaaaattgaaaatccatatttatctctcaaattaact-tgtaactnnnnnnnntatgtttcttaaattaatcataatttgt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||| |
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|
| T |
12697900 |
tttgataatttcattctatcaaaattgaaaatccatatttatctctcaaattaactctgtaactcaaaaaaatatgtttcttaaattaattataatttgt |
12697801 |
T |
|
| Q |
218 |
gtaaatgaaattggataaatctccttatcaacttggtcttccaccataaacatgaagaagcttcctttgaactataaacgtgaagcttcctaaacaaaaa |
317 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12697800 |
gtaaatgaaattggataaatatccttatcaacttggtcttccaccataaacatgaagaagcttcctttgaactataaacgtgaagcttcctaaacaaaaa |
12697701 |
T |
|
| Q |
318 |
caattatccatagcttcaaagggcatataataggacatagatctgaagccttgaaatttcaatttcaa |
385 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
12697700 |
caattatccatagcttcaaagggcatatcataggacagagatctgaagccttgaaatttcaatttcaa |
12697633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 16 - 385
Target Start/End: Complemental strand, 6052458 - 6052089
Alignment:
| Q |
16 |
tgtgttagcttatgttcctgttctttgattttcttgtgttctttcctcccaacaatctagactaataaccaacacgctagattaaagttccctttttgat |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6052458 |
tgtgttagcttatgttcctgttctttgattttcttgtgtgctttcctcccaacaatctagactattaaccaacacgctagattaaagttccctttttgat |
6052359 |
T |
|
| Q |
116 |
ggttttgataatttcattctatcaaaattgaaaatccatatttatctctcaaattaact-tgtaactnnnnnnnntatgtttcttaaattaatcataatt |
214 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| | ||||||||||||||||||||| |
|
|
| T |
6052358 |
ggttttaataatttcattctatcaaaattgaaaatccatatttatctctcaaattaactctctaactaaaaaaaaaa-gtttcttaaattaatcataatc |
6052260 |
T |
|
| Q |
215 |
tgtgtaaatgaaattggataaatctccttatcaacttggtcttccaccataaacatgaagaagcttcctttgaactataaacgtgaagcttcctaaacaa |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6052259 |
tgtgtaaatgaaattggataaatctccttatcaacttggtcttccaccataaacatgaagaagcttcctttgaactataaacgtgaagcttcctaaacaa |
6052160 |
T |
|
| Q |
315 |
aaacaattatccatagcttcaaagggcatataataggacatagatctgaagccttgaaatttcaatttcaa |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6052159 |
aaacaattatccatagcttcaaagggcatataataggacatagatctgaagccttgaaatttcaatttcaa |
6052089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 27 - 382
Target Start/End: Original strand, 31286440 - 31286795
Alignment:
| Q |
27 |
atgttcctgttctttgattttcttgtgttctttcctcccaacaatctagactaataaccaacacgctagattaaagttccctttttgatggttttgataa |
126 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31286440 |
atgttcctgttctttgattttcttgtgtgctttcctcccaacaatctagactaataaccaacacgctagattaaagttccctttttgatggttttgataa |
31286539 |
T |
|
| Q |
127 |
tttcattctatcaaaattgaaaatccatatttatctctcaaattaact-tgtaactnnnnnnnntatgtttcttaaattaatcataatttgtgtaaatga |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31286540 |
tttcattctatcaaaattgaaaatccatatttatctctcaaattaactctgtaactaaaaaaaa-atgtttcttaaattaatcataatttgtgtaaatga |
31286638 |
T |
|
| Q |
226 |
aattggataaatctccttatcaacttggtcttccaccataaacatgaagaagcttcctttgaactataaacgtgaagcttcctaaacaaaaacaattatc |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31286639 |
aattggataaatctccttatcaacttggtcttccaccataaacatgaagaaacttcctttgaactataaacgtaaagcttcctaaacaaaaacaattatc |
31286738 |
T |
|
| Q |
326 |
catagcttcaaagggcatataataggacatagatctgaagccttgaaatttcaattt |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31286739 |
catagcttcaaagggcatataataggacatagatctgaagccttgaaatttcaattt |
31286795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 19 - 385
Target Start/End: Original strand, 24064060 - 24064425
Alignment:
| Q |
19 |
gttagcttatgttcctgttctttgattttcttgtgttctttcctcccaacaatctagactaataaccaacacgctagattaaagttccctttttgatggt |
118 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
24064060 |
gttagcttatgttcttgttctttgattttcttgtgtgctttcctcccaacaatctagactaataacctacacgctagattaaagttctctttttgatggt |
24064159 |
T |
|
| Q |
119 |
tttgataatttcattctatcaaaattgaaaatccatatttatctctcaaattaact-tgtaactnnnnnnnntatgtttcttaaattaatcataatttgt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
24064160 |
tttgataatttcattctatcaaaattgaaaatccatatttatctc--aaattaactctgtaactaaaaaaaatatgtttcttaaattaatcataatttgt |
24064257 |
T |
|
| Q |
218 |
gtaaatgaaattggataaatctccttatcaacttggtcttccaccataaacatgaagaagcttcctttgaactataaacgtgaagcttcctaaacaaaaa |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
24064258 |
gtaaatgaaattggataaatctccttatcaacttggtcttccaccataaacatgaagaagcttcctttgaactataaacgtgaagcttcctgaacaaaaa |
24064357 |
T |
|
| Q |
318 |
caattatccatagcttcaaagggcatataataggacatagatctgaagccttgaaatttcaatttcaa |
385 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24064358 |
caattatccatagcttcaaagggcatatcataggacattgatctgaagccttgaaatttcaatttcaa |
24064425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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