View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8950_low_46 (Length: 386)

Name: NF8950_low_46
Description: NF8950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8950_low_46
NF8950_low_46
[»] chr6 (4 HSPs)
chr6 (231-352)||(28177991-28178112)
chr6 (255-345)||(28221052-28221142)
chr6 (5-77)||(28177798-28177870)
chr6 (309-351)||(28224176-28224218)
[»] scaffold0038 (2 HSPs)
scaffold0038 (255-345)||(21550-21640)
scaffold0038 (309-351)||(24674-24716)


Alignment Details
Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 231 - 352
Target Start/End: Original strand, 28177991 - 28178112
Alignment:
Q  231 tatgtttcaatgcacttcaatttgtagcaaaatgaattttgaaaggaatcagtgctttaaaattgttaaaattctttaaaattgtgaaattgcactctta 330  Q
    ||||||||||| |||||||||||||||||||||||||||||||  |||||| |||||||||||||||||| |||||||||||||||||||| |||| |||    
T  28177991 tatgtttcaattcacttcaatttgtagcaaaatgaattttgaagtgaatcattgctttaaaattgttaaatttctttaaaattgtgaaattacactttta 28178090  T
Q  331 tatgatgagtgatgaccttaca 352  Q
    |||||||||| |||||||||||    
T  28178091 tatgatgagttatgaccttaca 28178112  T

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Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 255 - 345
Target Start/End: Original strand, 28221052 - 28221142
Alignment:
Q  255 tagcaaaatgaattttgaaaggaatcagtgctttaaaattgttaaaattctttaaaattgtgaaattgcactcttatatgatgagtgatga 345  Q
    |||||||||||||||| ||  |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  28221052 tagcaaaatgaatttttaagtgaatcagtgctttaaatttgttaaaattctttaaaattgtgaaattgcacttttatatgattagtgatga 28221142  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 28177798 - 28177870
Alignment:
Q  5 tggaatttgtgccactctacaacatgaaccaaataatttcaaacattgaacggatccatgcagaggttgcatg 77  Q
    ||||||||| |||||||||||| |||||||||||||||||||||| ||| |||||| || |||||||| ||||    
T  28177798 tggaatttgagccactctacaatatgaaccaaataatttcaaacaatgatcggatctatacagaggttacatg 28177870  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 309 - 351
Target Start/End: Original strand, 28224176 - 28224218
Alignment:
Q  309 aaattgtgaaattgcactcttatatgatgagtgatgaccttac 351  Q
    ||||| |||||||||||| ||||||||||||||||||||||||    
T  28224176 aaattttgaaattgcacttttatatgatgagtgatgaccttac 28224218  T

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Target: scaffold0038 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 255 - 345
Target Start/End: Original strand, 21550 - 21640
Alignment:
Q  255 tagcaaaatgaattttgaaaggaatcagtgctttaaaattgttaaaattctttaaaattgtgaaattgcactcttatatgatgagtgatga 345  Q
    |||||||||||||||| ||  |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  21550 tagcaaaatgaatttttaagtgaatcagtgctttaaatttgttaaaattctttaaaattgtgaaattgcacttttatatgattagtgatga 21640  T

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Target: scaffold0038; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 309 - 351
Target Start/End: Original strand, 24674 - 24716
Alignment:
Q  309 aaattgtgaaattgcactcttatatgatgagtgatgaccttac 351  Q
    ||||| |||||||||||| ||||||||||||||||||||||||    
T  24674 aaattttgaaattgcacttttatatgatgagtgatgaccttac 24716  T

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